LOC110528006 (LOC106582975)


Basic Information

Item Value
gene id LOC110528006
gene name LOC106582975
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55047293 ~ 55052787 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609774.2
GGGCATAGAATATCTCCTGGATTAATCTATCACAGATTCATGTATTTCATGTATTTATGTAGACCGGATATAGGATTTAGCAAACCCTGCCTCTTCCTTTCTGGACAAGAATCGCCGGCCAACATGGCTCCGATTAAGAAGCAGGTCGTCAAAAAGACGAAGACGGGTGGCAAGAAGAAGAAGCAGGCCCTGAAGTTCACCCTGGACTGCACTCACCCAGTGGAGGATGGCATCATGGATGCTGCCAACTTCGAACAGTTCCTGCAGGAGCGCATCAAGGTCAACGGTAAAGCTGGAAACCTGGGTGGTGGCGTGGTGTCCATTGAAAGGAGCAAGAGCAAAATCTCTGTGAATTCTGAGGTGCCATTCTCCAAAAGGTACTTGAAATACCTGACCAAGAAGTACCTGAAGAAGAACAATCTGAGAGACTGGCTGCGTGTGGTGGCCAACACCAAGGAGAGTTATGAACTGCGATACTTCCAGATCAAccaggatgaggaagaggaggaggacgaagATTAAATCCATGCTTTCTTTTGTCAATAAAATGTCTAAAGAACAAAA

Function

NR:

description
60S ribosomal protein L22-like

GO: NA

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609774.2 True 564 mRNA 0.46 4 55047293 55052787

Neighbor

gene id symbol gene type direction distance location
LOC110528005 LOC106582976 coding downstream 10795 54998441 ~ 55036498 (-)
LOC110528967 LOC106565901 coding downstream 86237 54807649 ~ 54961056 (-)
LOC110528004 LOC106582978 coding downstream 562080 54202674 ~ 54485213 (-)
LOC110528966 LOC106582980 coding downstream 849081 54194715 ~ 54198212 (-)
LOC110528002 LOC106582983 coding downstream 866889 54166551 ~ 54180404 (-)
LOC110528008 atrap coding upstream 27197 55079890 ~ 55101228 (-)
LOC110528010 LOC106582973 coding upstream 53962 55106749 ~ 55132386 (-)
LOC110528009 LOC106582972 coding upstream 80008 55132795 ~ 55158158 (-)
LOC110528015 NA coding upstream 108135 55160922 ~ 55162246 (-)
LOC110528968 LOC106582963 coding upstream 143067 55195854 ~ 55196454 (-)
G625404 NA non-coding downstream 1202 55044189 ~ 55046091 (-)
G625410 NA non-coding downstream 4419 55042455 ~ 55042874 (-)
G624778 NA non-coding downstream 72855 54974192 ~ 54974438 (-)
G624892 NA non-coding downstream 75311 54971726 ~ 54971982 (-)
G624889 NA non-coding downstream 78422 54968666 ~ 54968871 (-)
G625414 NA non-coding upstream 44956 55097743 ~ 55098277 (-)
G625477 NA non-coding upstream 117607 55170394 ~ 55170660 (-)
G625472 LOC106582968 non-coding upstream 118275 55164492 ~ 55188756 (-)
G622985 NA other downstream 1724462 53305536 ~ 53322831 (-)
G619733 NA other downstream 4088753 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4741137 50300364 ~ 50306278 (-)
LOC110527961 LOC106565835 other downstream 5111012 49660022 ~ 49936575 (-)
mustn1b mstn1 other downstream 5750045 49295040 ~ 49297305 (-)
G625426 NA other upstream 19692 55072479 ~ 55075396 (-)
LOC110528020 LOC106582955 other upstream 380669 55420466 ~ 55566988 (-)
G627254 NA other upstream 1638536 56691323 ~ 56696091 (-)
G627314 NA other upstream 1781798 56834350 ~ 56835092 (-)

Expression


Co-expression Network