LOC110528968 (LOC106582963)


Basic Information

Item Value
gene id LOC110528968
gene name LOC106582963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55195854 ~ 55196454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611133.1
ATGGCTCCTTTTGCTGAAAGCAATATGCTTACTTATGTTAACTCGTCCTGTTCATCCAGTAATAAGTTACGGAAGCTCGTTGTGGAGAAAATTCGGAGAGACCGCATCAACATTAGCATTGAGCAACTGAGAACACTTCTCCACAGAGGACAGATATgtggacagcagcagcagcgcTTATCCAAACTGGAGAAAGCGGATATTTTGGAGTTGGCCGTGAGTTTCTTACAGAAGGAGACCAAAACGGGCGTTTCGCCCACCTACTCCCAGTGTCTGCAGGAGACCCTCCGCCACCTGTCCCTTCACGCGCCCCTGCAGGCTGCAGAACAACAGGATATCAAACGCTTTTACGTGCTCCAGAAAACAGCCCTGTCCAGGAGCATGTCAAGTGAACAGCACGCGCAGTCTGCAGCCAAGCGGTCAACATCAAGGTCATCATCACGGCGGTTCCAAGGCTCTCTGTGGAGGCCATGGCAATAG

Function

NR:

description
transcription factor HES-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611133.1 True 480 mRNA 0.51 2 55195854 55196454

Neighbor

gene id symbol gene type direction distance location
LOC110528015 NA coding downstream 33608 55160922 ~ 55162246 (-)
LOC110528009 LOC106582972 coding downstream 37696 55132795 ~ 55158158 (-)
LOC110528010 LOC106582973 coding downstream 63468 55106749 ~ 55132386 (-)
LOC110528008 atrap coding downstream 94626 55079890 ~ 55101228 (-)
LOC110528006 LOC106582975 coding downstream 143067 55047293 ~ 55052787 (-)
LOC110528016 LOC106582964 coding upstream 5685 55202139 ~ 55204250 (-)
LOC110528017 LOC106582961 coding upstream 13128 55209582 ~ 55225927 (-)
LOC110528018 LOC106582958 coding upstream 33267 55228600 ~ 55309126 (-)
LOC118965300 NA coding upstream 94073 55290527 ~ 55292821 (-)
LOC110528020 LOC106582955 coding upstream 224012 55420466 ~ 55566988 (-)
G625472 LOC106582968 non-coding downstream 7098 55164492 ~ 55188756 (-)
G625477 NA non-coding downstream 25194 55170394 ~ 55170660 (-)
G625414 NA non-coding downstream 97577 55097743 ~ 55098277 (-)
G625531 LOC106582960 non-coding upstream 117050 55313504 ~ 55314949 (-)
G625560 NA non-coding upstream 163370 55359824 ~ 55360081 (-)
G625568 NA non-coding upstream 172186 55368640 ~ 55368849 (-)
G625570 NA non-coding upstream 172891 55369345 ~ 55369642 (-)
G625426 NA other downstream 120458 55072479 ~ 55075396 (-)
G622985 NA other downstream 1873023 53305536 ~ 53322831 (-)
G619733 NA other downstream 4237314 50956271 ~ 50958540 (-)
LOC110527964 LOC106583033 other downstream 4889698 50300364 ~ 50306278 (-)
G627254 NA other upstream 1494869 56691323 ~ 56696091 (-)
G627314 NA other upstream 1638131 56834350 ~ 56835092 (-)
G627323 NA other upstream 1650508 56846962 ~ 56852301 (-)
vamp3 vamp3 other upstream 1657113 56853567 ~ 56869607 (-)

Expression


Co-expression Network