LOC110528996 (mmp19)


Basic Information

Item Value
gene id LOC110528996
gene name mmp19
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64227619 ~ 64230970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983812.1
TAATTGAGGTACTCAGGGTGTTCCAGAGGGTAACAGACCTTCCTGTCACTGGAGTGATTGACAAGGCCACCCTAGAGATGATGAGACAGTCTCGCTGTGGCATAGAGGACCCCTTCAATCAGAAAACCCTCAAGTACAGAGTGCTGGGCTACTGGCGCAAGAGAAGCCTGACCTGGTGCATCTACAACTACACTCCAGACGTGCCGAAGAGTGAGACAAAGAGGGCCATCCGCTCTGCTTTTAAGTATTGGAACGATGTGGCTCCCCTGAGCTTCCGAGAGGTTGAGTATGGACGAGCTGATATCAGGATCTCATTCCACACGAAAGATGCCACTTGTGCCGTGCCTTTTGACGGGAGGGGTGCGTCTGCCTATGGGCCGGATACAATTGGGTTGGAGTAACAAtagcctaacacacacacagtaggagtAACCCTAATTGCCATTGgaatataaaataatacaaaatattttAAATCTGTAGGTCACATGCTGGCCCATGCTGAACACCCACACCCATTGTTCATTTTGACTAGGATGAGTTTTGGACCGAGGGCATGTTCTACGGCATTAACCTACGTATCATCGCTGCCCATGAGATAGGCCACGCCCTGGGTTTAGACCACTCGCAATACAGAAGTGCTCTGATAGCCCCTCTTTACACTGGTTACCGTAGCAACTTCCGTCTGCATCCCGACGACGTAAAAGGCATCCAAGCTATGTATGGTAAACGTGGTACAAGTGTTCCAGTTGAGCCAACAGTGACACTCCCCACAGACAGCCTCCCTGATGCTGAGGGAGACATCCCAGACCCCTTCACCGCCAGGCTAGATGCCATCATGTTGGGTCCATGGAGGAAGACATTTGCCTTCAGTGGTGATTATGTGTGGACGGTCTCTGACATGGGGCACAATGCACCCATGAAGATCGACCGGCTGTGGATGGGACTGCCTGGGaacctgaaaacagctgtttaCTCTCAGAGAACCAACAAAACATACTTTTTTAAAGGTGATATAGTGTGGAGATAGTCCAGGAGAAAACTGGTGTACGGGTATCCCAAAGAGCTCAAACGCCTCCCACCTAATATTGATGCCGCTGGTGTTTTTCAAGGGTACAGGGTATTGGCAGTGGGATGAGCTGCGCTCCAGTAACCTCAACGTGTACCCCAAACCCTTGTCTAACCTCTTCAATGGGGTGCCCTCCAGCCCTGATTCTGCCTTTACCTGGACCAATGGAAAAATCTACTTCTTCAAGAGAGACAAGTACTGGCGTGTGAACAGTCTACTGAGCGTAGACAAAGGCTATCCACTCAGAAAGAGGGAACGCTGGATGCACTGTTAGGAGCAAGACACTAGGGGGAAGCAGACACCATAAGCCTTGATAGGGTGCTTTTGTGATGTGTGCTCAGTTCAGGGAACCACAACAGCAACCACAACCACACTGTGATAACATTGTGTTCACACTGTGAGGTGTCTGGAAACCATATATACATATCGCCATGAGATGATTTTTAAAGAAATACTGATAGTATGAACTGTGTAATACTTGTGTTAAATTACTTGACAGTGATTGACTGACAGTGGTACTGGTACATGATTTCAAGTGAGGATTGAGTTAGGTACAGTCAAAGTACATAAAACTGAAATGTTATATCAAATTAATTATTCTTGAAACACAATAACTTTTATCAGGTTGCGTATTGAGTGTCGTCCCACATAAGTAAAATGCATTTCTAGTTCTGGAGCAGTAACCTGCTGGGTTTGTTCATATCCTGATGGCGAAGCTCTCTGTTTCCATCAAACACAAGCAGGACCTCCAGCTGTATTCATCTGCTCTTTTCTTCCAACAGCCCAAACATGTTAGGcttagatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
mmp19 Predicted to enable metalloendopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular matrix. Orthologous to human MMP19 (matrix metallopeptidase 19).

NR:

description
PREDICTED: matrix metalloproteinase-19

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983812.1 True 1943 mRNA 0.47 7 64227619 64230970

Neighbor

gene id symbol gene type direction distance location
suox suox coding upstream 8647 64202184 ~ 64218972 (+)
LOC110528222 LOC106583247 coding upstream 28564 64099788 ~ 64201232 (+)
LOC110528221 LOC106583283 coding upstream 47651 64171785 ~ 64179968 (+)
mettl1 mettl1 coding upstream 98906 64113557 ~ 64128713 (+)
LOC110528219 LOC106583285 coding upstream 121289 64074700 ~ 64106330 (+)
LOC110528228 LOC106583278 coding downstream 102661 64333631 ~ 64338514 (+)
cdk2 cdk2 coding downstream 132917 64363887 ~ 64367851 (+)
LOC110528232 LOC106583276 coding downstream 137387 64368357 ~ 64434919 (+)
LOC110528234 LOC106583274 coding downstream 263702 64494672 ~ 64516024 (+)
LOC110528236 LOC106583269 coding downstream 303137 64534107 ~ 64637851 (+)
G634879 NA non-coding upstream 6689 64185969 ~ 64220930 (+)
G634849 NA non-coding upstream 85168 64134831 ~ 64142451 (+)
G634822 NA non-coding upstream 154097 64073301 ~ 64073522 (+)
G634819 NA non-coding upstream 156114 64071262 ~ 64071505 (+)
G635371 NA non-coding downstream 128964 64359934 ~ 64360156 (+)
G635378 NA non-coding downstream 155013 64385983 ~ 64393013 (+)
G635414 NA non-coding downstream 206460 64437430 ~ 64437689 (+)
G635472 NA non-coding downstream 301080 64532050 ~ 64532273 (+)
G635475 NA non-coding downstream 310506 64541476 ~ 64541985 (+)
LOC110528206 hoxc6 other upstream 606088 63619980 ~ 63622602 (+)
G633613 NA other upstream 1297920 62929398 ~ 62929699 (+)
LOC110528175 LOC105017014 other upstream 1885654 62325429 ~ 62342019 (+)
G632817 NA other upstream 1898558 62245920 ~ 62329061 (+)
G635332 LOC100380681 other downstream 87230 64318200 ~ 64326259 (+)
G635635 NA other downstream 554246 64785216 ~ 64786393 (+)
G635769 NA other downstream 820674 65051644 ~ 65052156 (+)
G635848 NA other downstream 1098966 65329936 ~ 65330292 (+)
LOC110528281 LOC106565490 other downstream 1673175 65901905 ~ 65908098 (+)

Expression


Co-expression Network