LOC110528281 (LOC106565490)


Basic Information

Item Value
gene id LOC110528281
gene name LOC106565490
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65901905 ~ 65908098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983866.1
GAGGCTAGAGAGTGTTTTGTTGTTAGAAAGTTCTTTGAAGGTTACTTATGTTTTCTTGAGGTTTTTATGGAAAGATTTcctaatgttctgagaacatgactttaaaaagaaccatgaggaaacctgtatgAAACGTtttgctgaagtactgaaattcccctgaagaacattgtttcttaacgttctcggaactatttgagaacattctcAATGtgaaaccagttggagaacgctccaagaacatttaaaaaatgttgatgaaatgtaaccatgtttgaacttttaggacaTGTTCTGTTAAAGAAATGAAATaccaaagttgtgggaaggttgtatgcaaaaataaccataggacaaccacgctcttaccaagctctaagaaacatatagttctcagaatgttatgcaCTAGCAAAGGATCACTATCCCCGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTATCCCCGTCTCAAAGGATCACTATCCCTGTCTCAAAGGACCACTATCCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTATCCCCGTCTCAAAGGATCACTATCCCCGTCGCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTATCCCCGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCCGTAGCAAAGGATCACTAACCCCGTAGCAAAGGATCACTATCCCCGTCTCAAAGGACCACTATCCCTGTCTCAAAGGATCACTATCCCCGTCTCAAAGGATCACTATCCCTGTCTCAAAGGACCACTATCCCTGTCTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCCGTCGCAAAGGATCACTAACCCTGTGTCAAAGGATCATAACCCTGTGTCAAAGGATCACTAACCCTGTGTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTATCCCTGTGTCAAAGGATCACTAACCCTGTCTCAAAGGATCACTAACCCTGTGTCAAAGGATCATAACCCTGTGTCAAAGGATCACTAACCCTGTCTCACAGATGTCAATTCTCTCAAAAATGTTCTACAGAATTGTTTGTTTCTTTAATGCTATGTTTATTAAATTCACTGGAATAATAgaaaacacacaaaaatacacacactcaGAGATACAAATACGGTTGGCCCATATACAGTAAGAAACATTATTTTGAGTGGCACCATAGAATGTTTCTGACACCTACACCTACCGGTCTACATTGGTTGTGTGCAAAGCGTGTGATAGGAGCATGTTGGTTGAATGCACCAGGTGTCAATAGACAACATCATTAAGGAAGGGCTTCTCCAGATTCCCCCTGGAAAGTGAGCTTGTAAAAATGTCCAGTGCATCAAGGGAGGTGTGTAAGAAGATTTGCATGTTGTTTGCATTGCTGTTTGCATGGCAAAGACCAATGTTTGACTTGGATCCTGCTAATATAGAACTGAACCATGTACTGACACCTAGTGCATAGGACAGGGTGGTGTTAAGAGTAGGTAAACAGTGTCACACACAGATTAGAGAAAGAGGTGAATAGAGAGAGATGCAAGGAGAGAAAAAGGGTAAGAGGTCAAACAAGGAGGAGGAAAGAAACTTAAAGGATTAAGCAATGGCTGAAAATAAGAGAGGGTGATGAAAAGGATGAAAGGAGAGAAGTAAAGGAAATGCACTACGGGAGAGTGAACGTGGGAGAAGATGCAGGGGAGTAAATAGAACAAtagacaggagaaagagagggagagatggcggGGTAGTGGACAGGCAGACGGATGGAAagctggacagacagacatatggGCAGCTAGGTGTGGCCaatagtgctgagtggggttgatCTCTCTCAATCCTCTTGGCTCGCTGTCTGTGTGTGCCCACCATCGGGCCACTGGCAGGGTGGCAGCATGAGCGTGGTCGGCCCGGGTGGCAGCCCTATTGAGGGGCAGTGTGATGGACACAATGCAAGCGACAGACTTGCTGCATCAACAGCATCCCCATTCCTGTTTTTTTTTGCTGCAGTGTGCCATTTATAAACCATAAATACCCCCCCTGGCCCCTAGTGCCTGCTCGCCAGGCCTCTACACTCACACGCCCTCATacagagtgagaaacagagaaataaataaaataaaagaaagAACAAGGAAAAACAAAGAGAGTGTGCCTTGTACGTGGTGCAGTGAAGCACAAGCCATCCAGGTAAAAAcagatctctctctttcctctctgtctgtcgtcTTGTGCTGCCAACAACTCTTGCTGTTTTCAATTATCCCTATTTATTGCTCTCCATAACCCTGTGTGCACTGTTGTTTTACCTGGAATTGAATATGTGTGAATGTATCAAATGCGATAGTGGAAAAGAATATGTAATATAGTGAGCTCCAAAAgaattgggacagtgacacattttgggagtttggctctgtactccagcactttggaaaTATAAATTATACAATGAGGCTAAATTTCAGACCGTCAGCTTTAATTgtagggtattttcatccatatagggtgaaccgtttagaaattacagcactttttgtgaATAGTCTCCACCATTTTAGGGccaccaaaagtattgggacaaattgaCTTATGTGTAATAAAGTAGTAAAAAGGGAAAAATCTGGTCCAATATTCATAACACGCAATAAATGTGAATAAACATTTGTTGGatacattttctgtttgttttggttgtgtttcagatgattttgtgcccaatagaaatgaatggtaaataatgtattgtgtcattttggagtcacttttattgaaaTTATAATAGAATATCTTTCTTAACGCTTcaacatgaatgtggatgctaccatgattatggatgatcctgaagtgtttagaaacagaTTCTATAGTTATTTACAatgaaagtgactccaaaatgacaatacattattgGAGTATTCGTGCACGCAAAAACTACAGTATTTGATTGCACTCGAATGCCAAATGTGGTACTGGACAACGCCAGAGGCTTGCTGATCTTATTGGCCAGACCTAAAGTGACTACGGCACAGACCACCTCGGACTTAGCTGTTATAGTCCCTGTTATAGTCCCTGTTGCCATTGTGTTAAGTGACTGACTGTGTTTGGGAATGTTTTGGAATGTAGAGGTAAAATGTCAGAGCAGCAGGGTGCACCGGAGCAGCTAGCAGCTGGGAAGAGCCAAGGAGGGGCAGGAGCCACCTATAAGGTGGTGGTGTTTGAGTTCGAGAATTTCCGTGGCAAGAAGGTGGAGCTGTCTGCAGAGTGTAAGGATGTGATTGAGAAGGAATGTGAGAAGGTGGGATCTGTCATTGTGGAATCTGGACCCTGGGTGGCGTTTGAGTGCCAGGCATTTGGCGGGGAGCAGTTTGTCCTGGAGAAGGGCGAGTATCCTCGTTGGAGCACCTGGACCAACAGCCAGACTAACAACTACCTGCTGTCCTTCAGGCCACTCCAAGTGGACAGTGCAGATCACAAGCTCCACCTGTTTGACAAACCAGGTTACACAGGGAGGAAGATGGAGATTGTGGACGACGACATCCCCAGCCTGTGGGTCCATGGCTTCCAGGACTGTGTGGCCAGTGTAAAGGCTCTGAATGGAACGTGGGTGGGCTACATGTTCCCAGGCTACAGGGGTCGCCAGTATGTCTTTGAGCTTGGAGACTACAAGCACTGGAACGACTGGGGAGCCACGGCGCCTCAGATCCAGTCCGTCCGACGAGTGCGTGACATGCAGTGGCACAAAAGGGGCTGCTTCACCGCCCCTGCCCCGCCCCCTGCCCCCACTCCTGCACCCAACCCCACACCCCCACCCACCGCTGGCACCAGCTGAAAGACAGTGGCTGTGGCCCCAGGCTCCCTAAGAAGCCAAACCCGGGCCCCCCAACCATCCAGGGCTCCACTGAGTCTCTCCTCATCACAGAGGGCCACCAAGAAACAACGAACTCGGAAGTGAAGTGACCATCACGGACTTACCTATGTGTCTGGAGTAGAAATAATAAAGGCTTTGACCCTGATT
>TU724056
ACTCACACGCCCTCATacagagtgagaaacagagaaataaataaaataaaagaaagAACAAGGAAAAACAAAGAGAGTGTGCCTTGTACGTGGTGCAGTGAAGCACAAGCCATCCAGAGGTAAAATGTCAGAGCAGCAGGGTGCACCGGAGCAGCTAGCAGCTGGGAAGAGCCAAGGAGGGGCAGGAGCCACCTATAAGGTGGTGGTGTTTGAGTTCGAGAATTTCCGTGGCAAGAAGGTGGAGCTGTCTGCAGAGTGTAAGGATGTGATTGAGAAGGAATGTGAGAAGGTGGGATCTGTCATTGTGGAATCTGGACCCTGGGTGGCGTTTGAGTGCCAGGCATTTGGCGGGGAGCAGTTTGTCCTGGAGAAGGGCGAGTATCCTCGTTGGAGCACCTGGACCAACAGCCAGACTAACAACTACCTGCTGTCCTTCAGGCCACTCCAAGTGGACAGTGCAGATCACAAGCTCCACCTGTTTGACAAACCAGGTTACACAGGGAGGAAGATGGAGATTGTGGACGACGACATCCCCAGCCTGTGGGTCCATGGCTTCCAGGACTGTGTGGCCAGTGTAAAGGCTCTGAATGGAACGTGGGTGGGCTACATGTTCCCAGGCTACAGGGGTCGCCAGTATGTCTTTGAGCTTGGAGACTACAAGCACTGGAACGACTGGGGAGCCACGGCGCCTCAGATCCAGTCCGTCCGACGAGTGCGTGACATGCAGTGG

Function

NR:

description
beta-crystallin B3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983866.1 False 4185 mRNA 0.45 5 65901905 65908098
TU724056 True 730 TUCP 0.53 6 65904145 65907819

Neighbor

gene id symbol gene type direction distance location
LOC110528279 LOC106583318 coding upstream 2518 65871734 ~ 65899387 (+)
LOC110528275 NA coding upstream 146854 65744766 ~ 65755822 (+)
LOC110528274 gem coding upstream 201317 65687873 ~ 65700588 (+)
c7h20orf96 cssa22h20orf96 coding upstream 216443 65677046 ~ 65685462 (+)
LOC110529001 NA coding upstream 286908 65614552 ~ 65614997 (+)
LOC110528284 LOC106583317 coding downstream 1084 65909182 ~ 65929285 (+)
plpp5 ppc1b coding downstream 66960 65975058 ~ 65983010 (+)
ddhd2 LOC106583313 coding downstream 75445 65983543 ~ 65991860 (+)
tacc1 LOC106586881 coding downstream 94368 66002466 ~ 66038960 (+)
LOC110528290 LOC106583572 coding downstream 141189 66049287 ~ 66114558 (+)
G636979 NA non-coding upstream 1842 65844102 ~ 65900063 (+)
G636968 NA non-coding upstream 33838 65864512 ~ 65868067 (+)
G636946 NA non-coding upstream 87995 65811466 ~ 65813910 (+)
G636922 NA non-coding upstream 120707 65780538 ~ 65781198 (+)
G636919 NA non-coding upstream 125933 65775760 ~ 65775972 (+)
G637018 NA non-coding downstream 2262 65910360 ~ 65918140 (+)
G637020 NA non-coding downstream 6312 65914410 ~ 65922263 (+)
G637025 tctn1 non-coding downstream 26904 65935002 ~ 65935583 (+)
G636973 NA non-coding downstream 34121 65942219 ~ 65977095 (+)
G637052 NA non-coding downstream 90495 65998593 ~ 66000866 (+)
G635848 NA other upstream 571613 65329936 ~ 65330292 (+)
G635769 NA other upstream 849749 65051644 ~ 65052156 (+)
G635635 NA other upstream 1115512 64785216 ~ 64786393 (+)
G635332 LOC100380681 other upstream 1575646 64318200 ~ 64326259 (+)
LOC110528222 LOC106583247 other upstream 1700673 64099788 ~ 64201232 (+)
G637929 NA other downstream 644490 66552588 ~ 66607744 (+)
G638011 NA other downstream 713588 66621686 ~ 66622094 (+)
patz1 LOC106583552 other downstream 1532434 67433792 ~ 67446077 (+)
G639648 NA other downstream 2305420 68213518 ~ 68214402 (+)
LOC110528344 LOC106583528 other downstream 2845965 68568757 ~ 68790841 (+)

Expression


Co-expression Network