XLOC_000025 (jam2a)


Basic Information

Item Value
gene id XLOC_000025
gene name jam2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 594584 ~ 608247 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000056
cacacacgcgcaggACCCGCGCGCTCTCGCTCCTCCAGCACAGCTCAGTCAGTGAGAGTTTGACCATCAGCGGTTTTCTGCACTCCAGCGCTTTTCCCCCTCCAGCTCTCGTTTTCTCGGATTCTCCTGAAAGTTCGTCCACTGTGGAGAAAATGCTGGTGTGCGTGTCTCTGCTGATATTAATTCACAGCGTCCCTGTGTCTCCCGTCACCGTCAGCAGTCGCAATCCTAAAGTGGAGGTGCACGAGTTCTCAGACGCAGAGCTCTCCTGCGAGTTCAAGACTGAGAAAGACACCAACCCTCGCATCGAGTGGAAGAGGAAAGACAAGGAAAAAGACGTGTCCTTCGTCTACTATGGAGAACGATTCGTAGGGCCGTTCCAGGATCGCGCAGATATTGAAGGAGCGACAGTGCGGCTACGCAGGGTCACTCAGGCGGACGCAGGCGAATATCGTTGTGAGGTCAGCGCTCCGAGTGACTCCATCTCACTGGGAGAAACCAACGTCACGCTGAGAGTGCTGGTTCCTCCTCAGACTCCCTCATGTGACGTGCCCAGCTCTGCTCTGACGGGCTCTCAGGTGGAGCTGCGCTGTAGAGACCGACACAGCATCCCACCTGCCGTCTACACCTGGTACAAAGACAACCGCGCACTGCCCATCCGCCATCCCAACGCCACCTACACCGTCAATGAGTTCACCGGTGTACTG
>TCONS_00000057
ATGCTGGTGTGCGTGTCTCTGCTGATATTAATTCACAGCGTCCCTGTGTCTCCCGTCACCGTCAGCAGTCGCAATCCTAAAGTGGAGGTGCACGAGTTCTCAGACGCAGAGCTCTCCTGCGAGTTCAAGACTGAGAAAGACACCAACCCTCGCATCGAGTGGAAGAGGAAAGACAAGGAAAAAGACGTGTCCTTCGTCTACTATGGAGAACGATTCGTAGGGCCGTTCCAGGATCGCGCAGATATTGAAGGAGCGACAGTGCGGCTACGCAGGGTCACTCAGGCGGACGCAGGCGAATATCGTTGTGAGGTCAGCGCTCCGAGTGACTCCATCTCACTGGGAGAAACCAACGTCACGCTGAGAGTGCTGGTTCCTCCTCAGACTCCCTCATGTGACGTGCCCAGCTCTGCTCTGACGGGCTCTCAGGTGGAGCTGCGCTGTAGAGACCGACACAGCATCCCACCTGCCGTCTACACCTGGTACAAAGACAACCGCGCACTGCCCATCCGCCATCCCAACGCCACCTACACCGTCAATGAGTTCACCGGTGTACTGATTCCACAGTCTCATTACAACCCAGGAACTGTATGTCAACACTGTATGTATCACCCTAACTACCACATTCCAAACACTCAGCTAACAACAACATTCCAAACACatgacCTGAACGTGGCGGCGGTGGTCTCAGCTGTGGTTCTGGTGTGTGTGATCCTCTTCCTCTGTGCGTTTGGAGTGTGTTTGGCTCATCGACAGGGATATTTCAGCCGACACAGAGGAAGgtcgTTCTGGATCCCTCATTGTCACGGCGTCACACACATCAGCAGCCAGAATCTGAACCCCAGCGAACACACtcagCATTCAGGATACAGTCACCCTCCAAAGGAACCTCAGGACTTCAAGCACACGCAGTCCTTCATGCTGTGA
>TCONS_00000058
atgacCTGAACGTGGCGGCGGTGGTCTCAGCTGTGGTTCTGGTGTGTGTGATCCTCTTCCTCTGTGCGTTTGGAGTGTGTTTGGCTCATCGACAGGGATATTTCAGCCGgcaggtcgTTCTGGATCCCTCATTGTCACGGCGTCACACACATCAGCAGCCAGAATCTGAACCCCAGCGAACACACtcagCATTCAGGATACAGTCACCCTCCAAAGGAACCTCAGGACTTCAAGCACACGCAGTCCTTCATGCTGTGATTGATGATTGGAGATTATTGGATCAGCAGCGCCTTTAAACCAGTCTGACACACACAGGCCGTGCCTTTATTTCTGCTCAATCATGTCTGTATACTGAGTGTGAGGATGGAAATCAGCagttattgtatattttaatcagtcgtcttcttttgttttttaataaaacgcTTTTGCCCCCGTCTCCTTTCTACt

Function

symbol description
jam2a Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development and myoblast fusion. Predicted to be located in tight junction. Predicted to be integral component of plasma membrane. Predicted to be part of protein complex involved in cell adhesion. Is expressed in several structures, including blood vessel; musculature system; myoblast; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2).

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0098636 protein complex involved in cell adhesion cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0070160 tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031204-3 Enables protein heterodimerization activity. Acts upstream of or within hematopoietic or lymphoid organ development and myoblast fusion. Predicted to be located in tight junction. Predicted to be integral component of plasma membrane. Predicted to be part of protein complex involved in cell adhesion. Is expressed in several structures, including blood vessel; musculature system; myoblast; nervous system; and pectoral fin bud. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2).

Ensembl:

ensembl_id ENSDARG00000058996

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000056 False 707 mRNA 0.57 5 594584 603397
TCONS_00000057 False 924 mRNA 0.54 12 594736 608055
TCONS_00000058 True 450 mRNA 0.48 4 604127 608247

Neighbor

gene id symbol gene type direction distance location
XLOC_000023 mrpl39 coding upstream 3253 532766 ~ 591331 (+)
XLOC_000024 dre-mir-155 coding upstream 18063 576444 ~ 576521 (+)
XLOC_000022 mrpl16 coding upstream 62155 524388 ~ 532429 (+)
XLOC_000021 txnl4b coding upstream 76508 513986 ~ 518076 (+)
XLOC_000020 blzf1 coding upstream 88964 494297 ~ 505620 (+)
XLOC_000026 NA coding downstream 186729 794976 ~ 911551 (+)
XLOC_000027 n6amt1 coding downstream 353360 961607 ~ 970951 (+)
XLOC_000028 NA coding downstream 407565 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 coding downstream 610444 1218691 ~ 1218805 (+)
XLOC_000030 NA coding downstream 707042 1315289 ~ 1342237 (+)
XLOC_000018 NA non-coding upstream 236022 355481 ~ 358562 (+)
XLOC_000011 NA non-coding upstream 437302 156792 ~ 157282 (+)
XLOC_000031 NA non-coding downstream 750484 1358731 ~ 1360831 (+)

Expression


Co-expression Network