XLOC_000021 (txnl4b)


Basic Information

Item Value
gene id XLOC_000021
gene name txnl4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 513986 ~ 518076 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000045
ATAGTGTTGTACCACACATTAGTAAACATCCGCAGGAGTTCGCGCACACCCTCCTCCATGTTAATTCAATTGATAAgtgggttttattttaattaaagcgTCATGAGCCTTTTCCTCCCTAAACTGTCGAGTAAAAAAGACATTGATGAGGCGATTAAGAGTGTCGCTGAGAAGGTTCTCGTGCTGCGCTTCGGCAGAGATGAAGATTCGGTGTGTCTGCAGATCGACGAGATCctgtcaaAGACGGCTCATGATCTGAGTAATATGGCCAGTATTTATCTGGTGGATGTCGACTCAGCTCCAGTTTACAGCAGATACTTTGACATCAGCTTTATTCCCTCCACCGTGTTCTTCTTCAACGGACAGCACATGAAAGTGGATTATGGATCTCCAGATCACACCAAGTTTGTGGGAAGCTTCAAAAGCAAGCAAGACTTCATGGATCTGATTGAAGTGATTTATCGAGGAGCCATGAGGGGAAAACTGATCGTCCAGAGCCCGATCGACCCCAGAAACATCCCCAAATATGACCTGCTGTACCACGACATCTAGCCGTGAGTTCAAGAGTTGTAAAAGGGACAATTCACACAAAAACCAACATTTCCTCCTCATTTACTTGCGCTTAAGTGTTTCTAATCTTTGGAgtttttccttctgttgaacacagaacaagatattttgaagaatgttgacatCAATtgtaggaacaaaaatactattgAAGACAATGGCTGTATTTCTCCAGtggatcttcatttgtgttcagcagaagagagaaactcaaacaggGATTACATGATGGTAGAATGATCACTTTTAGGTGTACCGTCCCTTTAAGAGCGATTGAAGAAGAGGATGCAGGGTTTCCTGTGGAAACGAGGATCTGATGTATTTATAATAACAGCTTTGTGTTGTGAAATATTTGTAAGTTTTCATAATAAAGCTCTGTGTTTTTACTGC
>TCONS_00000046
ACATTAGTAAACATCCGCAGGAGTTCGCGCACACCCTCCTCCATGTTAATTCAATTGATAAgtgggttttattttaattaaagcgTCATGAGCCTTTTCCTCCCTAAACTGTCGAGTAAAAAAGACATTGATGAGGCGATTAAGAGTGTCGCTGAGAAGGTTCTCGTGCTGCGCTTCGGCAGAGATGAAGATTCGGTGTGTCTGCAGATCGACGAGATCctgtcaaAGACGGCTCATGATCTGAGTAATATGGCCAGTATTTATCTGGTGGATGTCGACTCAGCTCCAGTTTACAGCAGATACTTTGACATCAGCTTTATTCCCTCCACCGTGTTCTTCTTCAACGGACAGCACATGAAAGTGGATTATGGATCTCCAGATCACACCAAGTTTGTGGGAAGCTTCAAAAGCAAGCAAGACTTCATGGATCTGATTGAAGTGATTTATCGAGGAGCCATGAGGGGAAAACTGATCGTCCAGAGCCCGATCGACCCCAGAAACATCCCCAAATATGACCTGCTGTACCACGACATCTAGCCaacaagatattttgaagaatgttgacatCAATtgtaggaacaaaaatactattgAAGACAATGGCTGTATTTCTCCAGtggatcttcatttgtgttcagcagaagagagaaactcaaacaggGATTACATGATGGTAGAATGATCACTTTTAGGTGTACCGTCCCTTTAAGAGCGATTGAAGAAGAGGATGCAGGGTTTCCTGTGGAAACGAGGATCTGATGTATTTATAATAACAGCTTTGTGTTGTGAAATATTTGTAAGTTTTCATAATAAAGCTCTGTGTTTTTACTGCtaa
>TCONS_00000047
ATCCGCAGGAGTTCGCGCACACCCTCCTCCATGTTAATTCAATTGATAAgtgggttttattttaattaaagcgTCATGAGCCTTTTCCTCCCTAAACTGTCGAGTAAAAAAGACATTGATGAGGCGATTAAGAGTGTCGCTGAGAAGGTTCTCGTGCTGCGCTTCGGCAGAGATGAAGATTCGGTGTGTCTGCAGATCGACGAGATCGTGAGTCGTACAGCTCAGATTAAGCatgttgtttatttctgtttatacCACAGCACAGTTGAATGGTCACtctcaggtgtttggttattgtcagataaaggcacagctaaagtagttccgacaggtttacagcttcatatcactccgctgaatgattagagttatttcacagctacaagaAATCACAACAGAAGCCTTCAGAGGAGATGTGGAGGACACTAGTGCTACACACAGAagcaaaaacctgacaaatacaCTCTCAAACACAACATCTGAACTGTGGATTTAGCTGAGAATAAGCAGAATAATGCACTCCTCAATATTGAGTTATCAGTATATAATGCACACTTGTTTTTCTGTTAACTCAATGAAGATTCATCAATTATTACTTGCATAAATAAGTTACATGTAATAGCggttatttaaactaaattaattttaaacactTTGCTTTCATTTAGTATATATTCTATGTTTATAATCACTATGTGTATATAATGAATCTATTTGTGATTAACATTTCATGTAGTCACTTGAGTTTGACTTGATCCACGCATGTATTTCACTTAAATACCTCGATTTAGTTGGCTATTAAAGTATCTATTATATACTTGTTAGATTTGTACAGCATTTTATA

Function

symbol description
txnl4b Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-63 Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B).

Ensembl:

ensembl_id ENSDARG00000058962

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000045 False 960 mRNA 0.42 3 513986 518073
TCONS_00000046 False 835 mRNA 0.42 4 514001 518076
TCONS_00000047 True 844 processed_transcript 0.36 2 514013 515322

Neighbor

gene id symbol gene type direction distance location
XLOC_000020 blzf1 coding upstream 8366 494297 ~ 505620 (+)
XLOC_000019 tpp2 coding upstream 70227 418869 ~ 443759 (+)
XLOC_000018 NA coding upstream 155424 355481 ~ 358562 (+)
XLOC_000017 cenpe coding upstream 217929 260039 ~ 296057 (+)
XLOC_000016 grk1a coding upstream 255848 245076 ~ 258138 (+)
XLOC_000022 mrpl16 coding downstream 6312 524388 ~ 532429 (+)
XLOC_000023 mrpl39 coding downstream 14690 532766 ~ 591331 (+)
XLOC_000024 dre-mir-155 coding downstream 58368 576444 ~ 576521 (+)
XLOC_000025 jam2a coding downstream 76508 594584 ~ 608247 (+)
XLOC_000026 NA coding downstream 276900 794976 ~ 911551 (+)
XLOC_000011 NA non-coding upstream 356704 156792 ~ 157282 (+)
XLOC_000028 NA non-coding downstream 497736 1015812 ~ 1033638 (+)
XLOC_000029 CR450787.2 non-coding downstream 700615 1218691 ~ 1218805 (+)
XLOC_000030 NA non-coding downstream 797213 1315289 ~ 1342237 (+)

Expression


Co-expression Network