RNA id: TCONS_00000046


Basic Information

Item Value
RNA id TCONS_00000046
length 835
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_000021
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 513986 ~ 518076 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTAGTAAACATCCGCAGGAGTTCGCGCACACCCTCCTCCATGTTAATTCAATTGATAAgtgggttttattttaattaaagcgTCATGAGCCTTTTCCTCCCTAAACTGTCGAGTAAAAAAGACATTGATGAGGCGATTAAGAGTGTCGCTGAGAAGGTTCTCGTGCTGCGCTTCGGCAGAGATGAAGATTCGGTGTGTCTGCAGATCGACGAGATCctgtcaaAGACGGCTCATGATCTGAGTAATATGGCCAGTATTTATCTGGTGGATGTCGACTCAGCTCCAGTTTACAGCAGATACTTTGACATCAGCTTTATTCCCTCCACCGTGTTCTTCTTCAACGGACAGCACATGAAAGTGGATTATGGATCTCCAGATCACACCAAGTTTGTGGGAAGCTTCAAAAGCAAGCAAGACTTCATGGATCTGATTGAAGTGATTTATCGAGGAGCCATGAGGGGAAAACTGATCGTCCAGAGCCCGATCGACCCCAGAAACATCCCCAAATATGACCTGCTGTACCACGACATCTAGCCaacaagatattttgaagaatgttgacatCAATtgtaggaacaaaaatactattgAAGACAATGGCTGTATTTCTCCAGtggatcttcatttgtgttcagcagaagagagaaactcaaacaggGATTACATGATGGTAGAATGATCACTTTTAGGTGTACCGTCCCTTTAAGAGCGATTGAAGAAGAGGATGCAGGGTTTCCTGTGGAAACGAGGATCTGATGTATTTATAATAACAGCTTTGTGTTGTGAAATATTTGTAAGTTTTCATAATAAAGCTCTGTGTTTTTACTGCtaa

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005682 U5 snRNP cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-63 Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U5 snRNP; and spliceosomal complex. Orthologous to human TXNL4B (thioredoxin like 4B).

Ensembl:

ensembl_id ENSDART00000081945

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 155439 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 155439 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 272294 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 276578 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 278468 227253 ~ 235533 (+) False XLOC_000015
TCONS_00000055 lncRNA downstream 62612 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 276900 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 276900 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 497736 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 497748 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000041 mRNA upstream 8381 494297 ~ 505620 (+) False XLOC_000020
TCONS_00000044 mRNA upstream 8384 496268 ~ 505617 (+) True XLOC_000020
TCONS_00000042 mRNA upstream 16980 494341 ~ 497021 (+) False XLOC_000020
TCONS_00000043 mRNA upstream 17143 494873 ~ 496858 (+) False XLOC_000020
TCONS_00000040 mRNA upstream 70242 418869 ~ 443759 (+) True XLOC_000019
TCONS_00000048 mRNA downstream 6312 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000049 mRNA downstream 6745 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000050 mRNA downstream 14690 532766 ~ 549521 (+) False XLOC_000023
TCONS_00000051 mRNA downstream 14731 532807 ~ 591328 (+) False XLOC_000023
TCONS_00000054 mRNA downstream 62566 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000036 other upstream 220107 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 500744 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000052 other downstream 19513 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 58368 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 700615 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1057407 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1194077 1712153 ~ 1718527 (+) False XLOC_000036

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05919510_05924061.mRNA False 2227 mRNA 0.39 7 CI01000299 5919128 ~ 5924628 (-)