RNA id: TCONS_00000055


Basic Information

Item Value
RNA id TCONS_00000055
length 790
lncRNA type retained_intron
GC content 0.53
exon number 3
gene id XLOC_000023
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 532766 ~ 591331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGCAGCGCAAGCATGTCGCCGATCTCTGACAGTTAGCGACTTGATTTTTCTACGTTTATTTGTGTAGTGTATGTTTATTCTGTTAACATTGTGCAGGAAAAGTGAGCTGTAGATCATGGCTACCGCTCGGACTGTCGGTCAGATGCTTCAGCGCCgTATGGTGTCCAGCGCTGCAGCTGCTCCTCGTCTGTCGTCTGCAGCGGTTCTGGCTCAGCGCAGTGCTCAGTTCTCCAGAGAGCAGCTCCGCCAGCGAGCGCTGCAGCCGCGGGTGGAGAAGGTGGAGGTGCAGCTGCAGGGGCCGGGTCTGCAGGGGACGCTGCTGGTGATGAACAGAGGCCTGTCTACACCATACAGCTGCGCACGCCACCTGTCCGAGTGGCATGTGAACAGCAGTGCGCTGGCACTGGTGGACGGTCAGCCGTGGCACATGCACAAACCCCTGACCCGCTCCTGTGAGCTCACACTGCTGACCTTCAGAGATGCAGACCCACAGACACTCAACCAGGTAGACTCCCTCACCACTAAACAGATTATCACAATCAGAACAACTGCTGGACGTGAGTTTAAAGGGGACAGATTATGCTGAAATCACTTTAATAAGGAGTTACatgtgagcagtgtgtgtgtgtatctccagcagcctctaatgATGAACATGAACtaattgtgtttattataacCAGACTTGATGCAGACACACTGtgattggcattctccctttgtacgcatcatcagaggggaaagccccgcccactagtgcccatctctccatctcattagcatctcc

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-6520 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

Ensembl:

ensembl_id ENSDART00000143526

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 222126 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 222126 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 338981 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 343265 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 345155 227253 ~ 235533 (+) False XLOC_000015
TCONS_00003005 lncRNA downstream 208475 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 208475 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 429311 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 429323 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003008 lncRNA downstream 728788 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00000050 mRNA upstream 31167 532766 ~ 549521 (+) False XLOC_000023
TCONS_00000049 mRNA upstream 48259 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000048 mRNA upstream 49753 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000046 mRNA upstream 62612 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000045 mRNA upstream 62615 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000056 mRNA downstream 8083 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000057 mRNA downstream 8235 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000058 mRNA downstream 17626 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000059 mRNA downstream 375106 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000062 mRNA downstream 1013478 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000053 other upstream 4167 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 34471 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 65366 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 286794 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 567431 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000060 other downstream 632190 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 988982 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1125652 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 1131196 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 1132110 1718611 ~ 1793371 (+) False XLOC_000036

Expression Profile

//