RNA id: TCONS_00002804


Basic Information

Item Value
RNA id TCONS_00002804
length 678
lncRNA type sense_over
GC content 0.52
exon number 4
gene id XLOC_000015
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 227241 ~ 243798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACCATCATCGACTGCAGCATCTCTAATgacaaGTTCGAGTATCTGTTCAACTTCGACAGCATGTTCGAGATCCACGATGATGTGGAGGTGCTGAAGCGGCTGGGTCTGGCGTTGGGTCTGGAGTCGGGCCGCTGCAGTGCGGAGCAGATGAAGATCGCCACATCACTGGTGTCTAAAGCTCTGCAGCCCTATGTCACCGATGGCGCAGGGCTCCGTCAACCAGCCGATGGATTTTTCCCATGTGGCTGCTGAGCGCCGCGCCTCCAGCTCCACCAGCTCACGTGTGGAGACGCCCACATCCCTGATGGAGGAGGACGaggaagatgaagaagaagactACGAGGAAGAGGACGACTAGAGCTGCACGCTGTGATCCTGCTGTAAGGATTCCCTCAAACGCTTCCCATAATGCTCAGCTCAGTCTGTGATCTGCTGGGGCTTATGAGCAGATGAGCTGGACTGATCGTCTTTGTGCTACTGATTCACGCCAGCGCTGAGGTTTTTACACTCTTCTCTTGTGGTTTCGCTCTCATAGGCAGCTATTTTTGATATCCCAGCTTTTTCTGGACGCTTCTCCACAGCTCTGAGCAAGCGTCCGGCCCTTTTGTACAATGCAATACTACAGAACGTATACTTTTCTTATTCTTGTATAGAGATTAAAGTGAAAGGTTGATtt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002802 lncRNA upstream 1858 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002801 lncRNA upstream 14587 221385 ~ 222804 (+) True XLOC_000014
TCONS_00003002 lncRNA upstream 80109 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000023 lncRNA upstream 106170 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 107800 127300 ~ 129591 (+) False XLOC_000008
TCONS_00003003 lncRNA downstream 113774 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA downstream 114064 355771 ~ 358562 (+) True XLOC_000018
TCONS_00000055 lncRNA downstream 338981 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 553269 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 553269 794976 ~ 911551 (+) True XLOC_000026
TCONS_00000030 mRNA upstream 12254 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000028 mRNA upstream 55133 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA upstream 55133 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000027 mRNA upstream 69993 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000026 mRNA upstream 79255 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000033 mRNA downstream 3369 245076 ~ 258138 (+) True XLOC_000016
TCONS_00000034 mRNA downstream 18332 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000035 mRNA downstream 18332 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000037 mRNA downstream 25328 267035 ~ 269883 (+) False XLOC_000017
TCONS_00000038 mRNA downstream 36024 277731 ~ 280259 (+) False XLOC_000017
TCONS_00000003 other upstream 224134 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 18333 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 272306 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 295882 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 334737 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 976984 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU466733 True 780 lncRNA 0.35 3 CI01000299 6189779 ~ 6197674 (+)