RNA id: TCONS_00000028


Basic Information

Item Value
RNA id TCONS_00000028
length 1088
RNA type mRNA
GC content 0.56
exon number 6
gene id XLOC_000013
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 176583 ~ 182258 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagagtgtgtctgtgtttgcgcTGCCGGCGTCTGCATCGGTGTCGGAGCGGAGCTCGTGCGGATCCGCTGCTGTTCCTCCAGAGCTGGCGCTGGTGtttggagacacacacacacacacactctctctgctgTTCTCCAGAGACCAGCGGCTCTACAGGGTCTCCAACATCAGCCTGCAGTACAACCTGAGCGATGGAGACATCTTCCCACAATCCTCTAgtgcaggtaaacacacacacacacacacacacacacacacgcacgcacctTCCCACAGTCCTCTAgtgcaggtaaacacacacaaacacatgcacacgcatACACAGACACTTTCCCACAATCCTCTAGtgcaggtcacacacacactctgaaatacactcatatgtgtgtgtgtgttgtgtgtgtgtgtgtgatagagagtgTGTGCAGTGCAGATCAGCCGTCTACAACTGTAGCTCCGCCCCCCAGCACCACCACATCTCCGCCCCCCATCCCCCCAGTGCCAGAGCGTGGAAACTACAGCGTTACAGACGGAAACGGCAccgtgtgtgtgctggcgctcatgggTCTGCAGCTCAACATCACACACACCACAACACAAAACCAGAGCGTGTCTGAGCTCATGAACCTGCAGCCCAATCAGACCACAGTCTCGGGGTCATGCGGGGTCACAGAATCCAGCCTCAGACTATCAGACGAGACGACCAACCTGACCTTCAGCTTCACCATGGtcagactgagtgtcaaacggaacttcctatatgctacacatgctagcaTTGTGTTTGAGGCAGGGAACACCTCTCTGTCTGCGCTGCAGTGCAGTGTGGGTCGCTCGTATGTGTGCAGCGCTCAGCAGATGCTCTCAGTGACGCCGGTCTTCTCCATCAACACCTTCAGACTGCAACTGCAGCCCTTCAACATCACCGCCAACCGCTTCTccacagcggaGGAGTGTCGTGTGGACCAGGAGAACATGCTGATCCCCATCATCGTGGGTGCGGCGCTGGCGGGGCTGGTGCTGATCGTGCTCGTGGCGTATCTGATCGGCAGGAAGAGAACACACGCCGGGTACCAGACCATCTGA

Function

GO:

id name namespace
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3708 Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

Ensembl:

ensembl_id ENSDART00000168760

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003002 lncRNA upstream 19301 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000021 lncRNA upstream 43368 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 45362 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 46992 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 138137 36727 ~ 38446 (+) True XLOC_000005
TCONS_00002801 lncRNA downstream 39127 221385 ~ 222804 (+) True XLOC_000014
TCONS_00002802 lncRNA downstream 44995 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 54142 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 55133 237391 ~ 241707 (+) True XLOC_000015
TCONS_00003003 lncRNA downstream 173223 355481 ~ 358562 (+) False XLOC_000018
TCONS_00000027 mRNA upstream 9185 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000026 mRNA upstream 18447 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000025 mRNA upstream 24585 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000024 mRNA upstream 34114 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000020 mRNA upstream 42504 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000030 mRNA downstream 36266 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000031 mRNA downstream 44983 227241 ~ 241707 (+) False XLOC_000015
TCONS_00000032 mRNA downstream 48105 230363 ~ 243798 (+) False XLOC_000015
TCONS_00000033 mRNA downstream 62818 245076 ~ 258138 (+) True XLOC_000016
TCONS_00000034 mRNA downstream 77781 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000003 other upstream 163326 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 77782 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 331755 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 355331 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 394186 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1036433 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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