RNA id: TCONS_00000024


Basic Information

Item Value
RNA id TCONS_00000024
length 2727
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_000009
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 135903 ~ 142469 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATAGATAAGCTCAGACGTGTTCATATTCTCCAGTTTCATGATTGCGAGCGCTGCTGTTTCTCCATTTCTCCTCCCCCTGTTCCTCTGTTTCTCTTTCTCCCTCCCAGCTCTCAGTTCATTGACCTTCTCTCTGTTTTCTGAACGATCTTTTAAAGTGAAAGAGTGGACGCCGACACCGACCATGTCTTGGGTTTTCTGGAACTTTATATCTTTGTTTGTCACCCACAGTGTGTGTGCAGAAGTCTTCCTCAACACTCGAGATGCTAATCAGGTTCTGATTCGTCAGCGGCGCGCAAACTCCTTGTTCGAGGAGATGAAGAAGGGGAACATGGAGCGCGAGTGCATTGAGGAGCGCTGCAATTATGAGGAGGCCAGAGAAATCTTCGAAGATGTTAAAAAGACGGATGAGTTCTGGCACAAGTATGTTGATGGAGATGCGTGTCTGTCTCACCCGTGTGTCAACGGTGGCCAGTGTAAAGATGCGATCGGGCCGTACACGTGTTTCTGTCAGCAAGGGTTCAAGGGCTACAACTGCGAGATCGTGATTCCTGAACTCTGCGAGAATGAAAACGGAGGCTGTGATCATTTCTGTGAGGTGATGGAGAAGAATGTGGTCTGCTCGTGTGCTAATGGATATGAACTGGCCCCCAACGGGAAATCCTGCCAGTCTCAGGATCCATTCAAATGTGGCGTCATTTATCCAAAGAAGACCAGAAGCATCTTCTTCCACACGCCGAACATCACCGAAAGCGAGAACGAAGAAGAGACGGAGCTGGAGGCCACCATAGAGCCGGTCTACAACCACTCGAACCCACTGAACAACCAGACCGACAGCATGTTCGGGCTCCACGAGCTGGAGATTATCGAGGAGGAACCAATCCTACCGGTGGTGTCCACAGCCGGAGACGGGAGGATCGTGAACGGTGTGGAGTGTCCACCTGGAGACTGTCCATGGCAGGCTCTCCTCATCAATGAAAATAACATGGGCTTCTGTGGCGGCACCATCCTGACCGAACACTTCATCCTGTCGGCCGCGCACTGCATGAACGAGTCGCTCTCCATCAGGGTGGTTGTAGgtGAGTACGACACGCTGGTCCCTGAGGGTCGCGAGGCCACGCATGATGTAGATGAGATTCTGATCCACAAGAACTACCAGCCTGACACCTACCACAACGACATCGCCCTCATCAAGCTCTCGAAACCCATCAAATTCACCAAATACATCATCCCCGCGTGTCTGCCGGAGATGAAGTTCGCTGAGCGTGTGCTGATGCAGCAGGATGACGGTCTGGTGAGCGGGTTCGGCCGCGTGCGTGAGGGAGGCCTGTCGTCCACCATCCTGCAGAAACTAACCGTGCCGTACGTCAACCGCGCTAAATGCATCGAGTCCAGCAATTTCAAGATCTCCGGCCGCATGTTCTGCGCCGGATACGACCAGGAGGAGAAAGATGCATGTCAGGGGGACAGCGGCGGGCCGCACGTCACGCGCTTCAAAAACACCTGGTTTATCACAGGTGTGGTGAGCTGGGGCGAAGGGTGCGCGCGCAAGGGGAAATACGGCGTCTACACACAGGTCTCCAAATACATCATGTGGATCAATAACGCAATGACGAAAGTCATGCCAGAGACCGGAGCGTCTTTAAAACCCAAAGCAAAGCGAGAGCTGCGGCACAAGACACCAATAAGAAGAGTCTGACTCCTCTGAGGAAAGCCTCATCTTTCATATGCATTTAATTACTCAGTCCACTAACAGCACAGGGctcaaactcaactcctggagggccgctgctctgcacagttttgctccaaccctactCAGACACACCTGATCCAGGTAATCAAGGTGTTCAGACTACTCTgagtggatcagctgtgtttgagtagggttggagcaaagctgtgcagagctgcagccctccaggagttgagtttgagCCCTGTGCTttaagggagagttcacccaaaagttacTCGTCCTTTACCAGCTTCTAGTTTTCTGttataaaacaaaagaagaagttctgaagaatgttgaacacCTTTATCTATTGGTTTTTATTCTTACTATGGAGGTCAGTGGTGTAACTTAAAagtatgaatattaataattaatgataacaaGTTGCaatttaattatgaatattttaattttaatcggATTTCATTACAATGGCTACAGGCTTTTGGCTTTCTttagaatattttcttttgtgtttaaaagaagaaagaaactcttaaatgtTTGGCAGTAAATAGTGGGTAAAtgtagatttttgggtgaactgtggcTTTAGTGTAATCCTCATGTGTATTAATATCATGGTATTTCTAGTAAAATCACATTATGGAGGTAGAATGGTTCATCAATGCTTCGACCATCATCCAGATGAGATGTCTGAGTTTTAATAAAGATGATAAACTGATTCTATGAGCTGTTTCACTCATGTTTTTAGTCAAATACAGATTATAGATGAAGTCGAAGGCAACATTATTTACTCTCCAGTGAAATTTTctttaatactttttcttctgcagaaagtttattttagtttggctgttGTTCATTTTTTAAGATCAATTTTTAAGATATTTAACATTAAGATAATTTTTTTAGTCCACAATCTACAAATttatctacagagcaaaccactgttgtcaaattaacttagttaagccttaaTTGAATactactttaagctgaatactagtatcttgaaaaatagc

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko01002 Peptidases and inhibitors
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-021206-9 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Acts upstream of or within hemostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including epidermis; liver; otic vesicle; pharyngeal arch; and yolk syncytial layer. Human ortholog(s) of this gene implicated in breast cancer and factor X deficiency. Orthologous to human F10 (coagulation factor X).

Ensembl:

ensembl_id ENSDART00000124837

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000021 lncRNA upstream 2688 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 4682 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 6312 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 97457 36727 ~ 38446 (+) True XLOC_000005
TCONS_00003001 lncRNA upstream 103550 27814 ~ 32353 (+) False XLOC_000004
TCONS_00003002 lncRNA downstream 14323 156792 ~ 157282 (+) True XLOC_000011
TCONS_00002801 lncRNA downstream 78916 221385 ~ 222804 (+) True XLOC_000014
TCONS_00002802 lncRNA downstream 84784 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 93931 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 94922 237391 ~ 241707 (+) True XLOC_000015
TCONS_00000020 mRNA upstream 1824 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000019 mRNA upstream 10657 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000018 mRNA upstream 16757 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000016 mRNA upstream 96712 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000012 mRNA upstream 101573 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000025 mRNA downstream 1815 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000026 mRNA downstream 15324 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000027 mRNA downstream 15565 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000028 mRNA downstream 34114 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA downstream 34117 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000003 other upstream 122646 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 117571 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 371544 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 395120 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 433975 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1076222 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06281861_06289368.mRNA True 4656 mRNA 0.26 8 CI01000299 6279383 ~ 6290025 (-)