RNA id: TCONS_00000025


Basic Information

Item Value
RNA id TCONS_00000025
length 1519
RNA type mRNA
GC content 0.52
exon number 8
gene id XLOC_000010
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 144284 ~ 151998 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTGTGGTGGACTGCGATGGAGTCGCTTGTATATCGTCTGCTGTTCTTCATGCTAATCACTCATCATGTGTCGTCTGGAGATCAGCGTACAGtGTTTCGCTCGCGCCGGCGGGCCAACGCTCTGCTCCTGCGCTCCAGACGGGCCAATACATTTCTGCTGGAGGAGATCCTGCAGGGCAATCTGGAGCGCGAGTGTTATGAGGAGAAATGCAGTAAAGAAGAGGCCCGAGAATGCTTCGAGAACGACCAGAAGACGAATGAgttctgggccaaatactatgATGGAGACCAGTGCAGATCTAACCCGTGTCAACATGGCGGCACGTGTAAGGATGGCATCGGCCGATACACCTGTACCTGTGCGGAGGCGTACAGCGGGCACGACTGTCAGACAGATAAATCCCAGTGTCCATCTGCTGGCCCTTTAGCATGTGAGCACTTCTGCAGGCCGTCAACAGCTGCATACCGATGCTTCTGTGCTCGCGGATACACACTCAACAGCGACGGCAGGAGCTGCTCACCTAACGTCCAGAACCCGTGCGGGACGACGGAGATGTCCAGTTTCTGTCCTGATGGACGCTGCTCATGGGAGGTGAGGTTTCTGAACGCCAGCGGTCATGACGTGTGTCACGGTGTGATTCTGGGCCAGAAGTCTATTCTGACATCAGCCACATGTATGACTGCACTGCAGGATCTGCACTTCACTGTCGCGGTGGGCGTCTCCACTGCAGCTGTGCGCGTCTCCAGCTGGACACCTCATAAGCGTTTCCTCTCTGGTCCGGATGATGACCTGTGTTTCCTGGAGCTGCAGGAGCCGTTCCCCCCCAACATCAGCACCGTCCCGCTCTGCCTGCCTGAGAAAGACTACAGCGAGAACATCCTGATGAGGGCAGGGCGAGAGGGTGTGGCCGAGGGCGGAGCCACATACTCATACCTGTCATTGGACGACTGCCGTGACGCTCTGAACCTCACCTTCGTGATGACCAATAAGATGTTCTGCATGAAGCGTGAGTCTGCAGGCTCCGAGCGCTGCACTGTGAGCTCCGGCAGCCCCGCCGCCACACTGGAGGGAAAAACAGCCTTTCTGACAGGCGTGTCTCTGTCTGCGGGACGCTGCGGGGACACACTGCTGTTCACCAAACTGTCCCGATACCTGCACTGGCTGCGGCCGCTGCTGCTCGCCTCCGAGAGGGAGCAACCCTGAGAGGGAAACAGACTATACACAGAGCAGGATCtgattttgaaagtaatgcaGTGCAATATTGAGCTGCTCCTTACTTGAGTTACTGAAGAGGAACTAGTAGCTTTACTTGGTTACCTGTTATGGTGAGTAATACGTTACATTACTGTTGAGTTATTTATAGCGATTCTAAAAATGATTGCATTGCAGTCGAGATTTAAAAGATAATAAGTtaagaattgttttattttaaaaacgatTTCCTGAAAACTCAGATGAGAATCAGTGTTtggctgaaaaaaataataaattaaataaataaaatgactacaACTGA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120816-1 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within blood coagulation and proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in Behcet's disease and brain ischemia. Orthologous to human PROZ (protein Z, vitamin K dependent plasma glycoprotein).

Ensembl:

ensembl_id ENSDART00000064061

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000021 lncRNA upstream 11069 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 13063 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 14693 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 105838 36727 ~ 38446 (+) True XLOC_000005
TCONS_00003001 lncRNA upstream 111931 27814 ~ 32353 (+) False XLOC_000004
TCONS_00003002 lncRNA downstream 4794 156792 ~ 157282 (+) True XLOC_000011
TCONS_00002801 lncRNA downstream 69387 221385 ~ 222804 (+) True XLOC_000014
TCONS_00002802 lncRNA downstream 75255 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 84402 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 85393 237391 ~ 241707 (+) True XLOC_000015
TCONS_00000024 mRNA upstream 1815 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000020 mRNA upstream 10205 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000019 mRNA upstream 19038 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000018 mRNA upstream 25138 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000016 mRNA upstream 105093 36552 ~ 39191 (+) False XLOC_000005
TCONS_00000026 mRNA downstream 5795 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000027 mRNA downstream 6036 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000028 mRNA downstream 24585 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA downstream 24588 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000030 mRNA downstream 66526 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000003 other upstream 131027 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 108042 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 362015 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 385591 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 424446 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1066693 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06274590_06278765.mRNA True 1727 mRNA 0.54 8 CI01000299 6274427 ~ 6279132 (-)