RNA id: TCONS_00000027


Basic Information

Item Value
RNA id TCONS_00000027
length 1905
RNA type mRNA
GC content 0.54
exon number 18
gene id XLOC_000012
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 157793 ~ 167398 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGAAGATGTTCAGCACCAGCAGAAGTCCAGCTTTAATGGACTCAGCAAATCCGCCAAAGCAGGAGCGTCGAAGAAGCTGGTCATCAAGAACTTTAAAGACAGACCCAAGCTGACAGACTCCTACACTGAAGACACGTGGCTGAAGCTCAGAGATGCTGTGAGCGCCATTCAGAACAGCACATCCATCCAATACAACCTGGAGGAGCTTTaccagGCTGTGGAGAATCTGTGTTCGTATAAAGTGTCGCCGATGTTGTACAAGCAGCTGCGACAGGTGTGTGAAGAGCACGTGCAGGCGCAGATTCACCAGTTCAGGGAAGAGTCTCTGGACAGCCTGTCGTTCCTGAAGAGGATGAACCGCTGCTGGCAGGACCACTGCAGACAGACGATCATGATCCGCAGTATTTTCCTCTTCCTGGACCGAACGTACGTCCTCCAGAACTCGCTGCTGCCGTCCATCTGGGACACAGGGCTGGAGCTGTTCCGCACACACATAGTGAGTGACGCGGCGGTTCAGAGCCGGACGGTGCAGGGGATCCTGGAGCAGGTGGAGCGCGAGCGCAGCGGGGAGACGGTGGACCGCAGTCTGCTCAGGAGCCTACTGGGCATGCTCTCTgacctgcaggtgTATAAGGACTCGTTCGAGCAGAGGTTTTTATCAGAGACGACCCGTCTGTACGCCGCTGAGGGACAGAGACTGATGCAGGAGAGAGACGTTCCAGAGTATCTCCATCATGTGGCGCGGCGTCTGGAGGAAGAGAACGACCGCGTCATCAGCTATCTGGACCAGAGCacacaGAAGCCTCTGATCGCCACGGTGGAGAAGCAGCTGCTGGGAGAACACATGACCACCATCCTGCAGAAAGgcCTGCGGACGCTGCTGGATGAGAACCGTGTGTGTGAGCTGACGCTGCTCTATGAGCTCTTCAGTAAGGTTAAAGGCGGCCTGACGGCACTGCTGCAGTCCTGGAGAGAATACatcaagAGTGTGGGAGCGGAGACGGTGTGTTCTCCGGAGCGGGACAGGGAGATGGTGCAGGAGCTGCTGGACTTTAAGGATCAGATGGACTCGGTGACGCAGAGCTGCTTCCAGAGGAACGAGAGCTTCATCAACGCCATGAAGGAGGCCTTCGAGAACTTCATCAACCAGAGACCCAACAAACCCGCAGAGCTCatcgCCAAATATGTGGACTCTAAGCTGCGAGCGGGAAATAAAGAAGCcacagaggaggagctggagagAATCCTGGACAAGATCATGATCATCTTCCGCTTCAtccacgGTAAGGATGTGTTCGAGGCGTTCTACAAGAAGGATCTGGCCAAGCGTCTGCTGGTGGGCAAGAGCGCTTCAGTGGATGCAGAGAAGTCCATGCTCTCCAAACTCAAACACGagTGTGGAGCAGCGTTCACCAGTAAACTTGAGGGAATGTTCAAAGATATGGAGCTCTCCAAAGACATCATGATCCAGTtcaaacagtatatGCAGAATCAAACTGAGCCCAGCAACATTGAGCTGACCGTCAACATCCTGACTATGGGCTACTGGCCCTCGTACACACCGATGGACGTCCATCTGCCTGCTGAGatggtGAAGCTGCAGGAGGTGTTTAAGCTCTTCTATCTGGGTAAACACAGCGGACGGAAACTACAGTGGCAGCCGACACTTGGACACGCAGTGCTGAAGACAGAGTTTAAAgagggtAAGAAGGAGCTGCAGGTTTCTCTGTTCCAGACTCTGGTTCTGCTGATGTTCAATGAGTCTGACGAGTGTTCAGTGGAGGAGATCAGAGTGGCTACAGGCATcgaggagGGCGAGCTGAAGCGTACGCTGCAGTCTCTGGCGTGTGGTAAAGCTCGAGTGCTCAATAAGACCCCCCGAGGGAAAGAGGTGGAGGAC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0016567 protein ubiquitination biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0033339 pectoral fin development biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1357 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic pectoral fin morphogenesis; heart development; and otic vesicle morphogenesis. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in brain; heart; and pectoral fin. Orthologous to human CUL4A (cullin 4A).

Ensembl:

ensembl_id ENSDART00000160843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003002 lncRNA upstream 752 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000021 lncRNA upstream 24819 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 26813 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 28443 127300 ~ 129591 (+) False XLOC_000008
TCONS_00000017 lncRNA upstream 119588 36727 ~ 38446 (+) True XLOC_000005
TCONS_00002801 lncRNA downstream 53987 221385 ~ 222804 (+) True XLOC_000014
TCONS_00002802 lncRNA downstream 59855 227253 ~ 235533 (+) False XLOC_000015
TCONS_00002803 lncRNA downstream 69002 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002804 lncRNA downstream 69993 237391 ~ 241707 (+) True XLOC_000015
TCONS_00003003 lncRNA downstream 188083 355481 ~ 358562 (+) False XLOC_000018
TCONS_00000025 mRNA upstream 6036 144284 ~ 151998 (+) True XLOC_000010
TCONS_00000024 mRNA upstream 15565 135903 ~ 142469 (+) True XLOC_000009
TCONS_00000020 mRNA upstream 23955 127250 ~ 134079 (+) False XLOC_000008
TCONS_00000019 mRNA upstream 32788 119960 ~ 125246 (+) True XLOC_000007
TCONS_00000018 mRNA upstream 38888 109798 ~ 119146 (+) True XLOC_000006
TCONS_00000028 mRNA downstream 9185 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA downstream 9188 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000030 mRNA downstream 51126 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000031 mRNA downstream 59843 227241 ~ 241707 (+) False XLOC_000015
TCONS_00000032 mRNA downstream 62965 230363 ~ 243798 (+) False XLOC_000015
TCONS_00000003 other upstream 144777 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 92642 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 346615 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 370191 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 409046 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1051293 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06257032_06266210.mRNA True 2921 mRNA 0.51 15 CI01000299 6255857 ~ 6266210 (-)