RNA id: TCONS_00003006


Basic Information

Item Value
RNA id TCONS_00003006
length 838
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id XLOC_000026
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 794976 ~ 911551 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTAAGCCCAAAATGGAGTCATTTTGGATTCACACTACAAACGGAGTTGGTGTGTGGTTGCTTTTGGCTTTGTACGGGGGAGATGCTCTGAAacggacacacaaacacaagGAGCTCAGTGTGTGGAGGCTTACAGAAACGGCAGACCAAAAGTGTGGTGaaactcagattttttttctctctgtcatCCTGCAACCCGACTCCTCTGCCTGCGCTGGTGTGAAAACAGTAAAGGAGCAGATCTGGGCTTGACGTCATCAGGATTTTCCCTGGAGTCCTGCAGGTGTCCACCCAGCGGAGgcttttaacagagagaagagctGCAGATCCACAGCTGTTCAGAGAAACGCTCACCTGTAATCAGGACTCATCCAGCTGTTTCTGCAGTCTGACGGCATTGACATCTTTTCCAAATGCGAGTTCTGGATGTCTGTATGAATTTCTCAGTGTGAATCTGGCCTTGCAGTGAACCAATACCAGTCAAGTTCACCCCCACATGTGGGATTGCAGTGAATCTGAGCTCTGCTTTAGTCATAATGTTCATGAAAGAGAGAAACGCCCACCGTCTGATGGCTTTACAATGTGACAAAAAACAGGACAGCTTCAGATTTCATCCGCATTGCACCCTCAGAAGCTCCTGAAATCATGGACCGTCATCTAAACACTGCTCTGGCAAGAGAAACACTAAACCTATGAAagaaatgtatacttttattCTCACATTGGATTTATTGAAACTGACAGGAAAGACATTTAAAATGCTACAAAAAATATTCGATTTCAGATAAATGCTCAATTGAAGCTTCTACTCAACTGTGAGTCATGAAAATTAAAATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000055 lncRNA upstream 208475 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003003 lncRNA upstream 436414 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 436414 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 553269 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 557553 236400 ~ 237423 (+) False XLOC_000015
TCONS_00003007 lncRNA downstream 104261 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 104273 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003008 lncRNA downstream 403738 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00003009 lncRNA downstream 403738 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00003010 lncRNA downstream 447180 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00000058 mRNA upstream 186729 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 186921 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 191579 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 203645 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000051 mRNA upstream 203648 532807 ~ 591328 (+) False XLOC_000023
TCONS_00000059 mRNA downstream 50056 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000062 mRNA downstream 688428 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000063 mRNA downstream 778224 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 800589 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 877806 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000053 other upstream 218455 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 248759 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 279654 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 501082 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 781719 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000060 other downstream 307140 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 663932 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 800602 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 806146 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 807060 1718611 ~ 1793371 (+) False XLOC_000036

Expression Profile

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