RNA id: TCONS_00000059


Basic Information

Item Value
RNA id TCONS_00000059
length 1159
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_000027
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 961607 ~ 970951 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGAAGGATGCGAGTCCACGCTGTGTTGTTTGAAAATCATGTTTGAGGAGCTAAGAGGATGCTGATCGTGTGTCCAGATGTTTGAAATCAGCTTTATTTGATGGAGCGACTGGGCAGAAGCGAAGCTCACGTGTTCGGGCAGATTTATAGACTTCATTAAGACACTGCCTTGCTGTGGTGATGTTCCCGACTCCTCTGTATGCTCCGGCCGGTCGCGGCCGCTTTTCGGAGGTGTATGAACCGGCCGAGGACTCGTTTCTCCTGATGGACGCTCTGGAGAAAGACGCAGATCGGCTGAAGGACAGCAGgCCATGTGTGTGTCTGGAGGTTGGCAGCGGCTCCGGTGTGATCTCAGCCTTCCTCGCGTCTTTACTCGGCGCTCAGGCCTTATATATctGTACAGATGTGAATGCGGATGCGGCTCAGTGTTCAATGCAGACGTCTATCCTCAATAACCTGCATGTGCAGCCTGTCGTCACTGACCTGGTCGAGTGTCTTCTGCCCAGGTTGAATGGAAAAGTGGATGTGCTTGTTTTCAATCCGCCGTATGTGGTCACGCCGTCAGAAGAGgtgggCAGTCATGGTGTGGAGGCGTCGTGGGCCGGTGGTCTCCACGGTCGAGAAGTGATGAACCGCTTTTTCCCCATGATTCCTGATCTGATGTCTGAGCATGGGCTGTTTTACCTGGTCACCGTGTCTGATAATGATCCCGAGGGGATTGTGGATCTGCTGGCTCGCTCTGGTCTGGATGGACACGTGTGTTTGACTCGTCAGGCCGGACGAGAGACGCTCACCATCCTCAGATTCAGTAAAACAGCGGAAAAAACACAGATTCATTAAAAACGAAGACTTTTCTGTCTCTTAAGTCTGCAGATTATGAAAACACATGATTCCTGGACACTCCTCAGACTGTGATAAACATCGTCTTCTGTGTGTTTTCTCATGAACACTCTTGACTGTGTTTTTGAGCCATCTATTGACTCACTGAACTCAGTTACCCAGAATCCCACTCTCATCCCTCAAACGAGCTGTTTTTGAAAGGGCAGTACTGCAATGTCGACTTTCATCATTTCAGACTCCTTTTTTCCCCCAAGAATTCTACAGAatatcttgtttgtttgtttttttttacaacaagaAATAAAATCATCAAAGTTT

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0035657 eRF1 methyltransferase complex cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008276 protein methyltransferase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040718-206 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity and protein methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be part of eRF1 methyltransferase complex. Orthologous to human N6AMT1 (N-6 adenine-specific DNA methyltransferase 1).

Ensembl:

ensembl_id ENSDART00000184660

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003006 lncRNA upstream 50056 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003005 lncRNA upstream 63427 794976 ~ 898180 (+) False XLOC_000026
TCONS_00000055 lncRNA upstream 375106 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003003 lncRNA upstream 603045 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 603045 355771 ~ 358562 (+) True XLOC_000018
TCONS_00003007 lncRNA downstream 44861 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 44873 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003008 lncRNA downstream 344338 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00003009 lncRNA downstream 344338 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00003010 lncRNA downstream 387780 1358731 ~ 1360451 (+) False XLOC_000031
TCONS_00000058 mRNA upstream 353360 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 353552 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 358210 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 370276 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000051 mRNA upstream 370279 532807 ~ 591328 (+) False XLOC_000023
TCONS_00000062 mRNA downstream 629028 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000063 mRNA downstream 718824 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 741189 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 818406 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 834343 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000053 other upstream 385086 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 415390 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 446285 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 667713 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 948350 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000060 other downstream 247740 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 604532 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 741202 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 746746 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 747660 1718611 ~ 1793371 (+) False XLOC_000036

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU84597 False 782 lncRNA 0.58 3 CM030128.1 1564787 ~ 1566340 (-)
tiger barb (Puntius tetrazona) TU84597 False 651 lncRNA 0.39 3 NC_056705.1 31916022 ~ 31917486 (+)