RNA id: TCONS_00000063


Basic Information

Item Value
RNA id TCONS_00000063
length 3246
RNA type mRNA
GC content 0.48
exon number 22
gene id XLOC_000035
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1689775 ~ 1706159 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGCTTTTTGTCTCCGGAAGGGCTCTCAAGCGGACTACGACATCTGAAAGTCTGAGTTGGAATAATCCAGGAAAATGGGGCTTGGAACTGGAAATGATAAGTACAAACTGGCGGCAACTTCAGAAGATGAAGCCAAAGCgccaaaaaaagggaaaaagaagCAAAAGGACATGGATGAGCTTAAGAAAGAAGTGGATCTGGATGACCACAAGTTGACGCTAGACGAGCTTCACCGCAAATACGGGACTGACCTGACCAGGGGCTTGTCTTCCTCTCGTGCAAGGGAGGTCTTGGCTCGTGATGGACCCAATGCGTTGACTCCTCCACCAACCACTCCAGAATGGGTCAAGTTCTGCAAGCAGCTCTTTGGAGGATTCTCTACTCTCCTGTGGATTGGTGCCATCCTTTGTTTTCTTGCCTACGGCATCCAGGCGGCCTCTGAAGACGATCCCACGAATGACAATCTTTACCTGGGGATTGTGCTGGCTGGTGTTGTCATAATCACTGGATGCTTTTCATACTACCAAGAAGCCAAAAGCTCAAAGATCATGGAATCGTTTAAGAACCTTGTTCCTCAGCAAGCCCTGGTTGTGCGTGATGGAGAGAAAAAGAGCATCAATGCTGAGGAGGTGGTCGCTGGTGACCTTGTGGAGGTCAAAGGTGGAGACCGAATCCCAGCTGACCTTCGCATCATCTCTGCACATGGATGCAAGGTGGACAACTCTTCCCTCACTGGAGAATCTGAACCCCAGACTCGTACTCCTGACTTCTCCAATGATAACCCACTGGAGACCAGGAACATTGCGTTCTTCTCTACCAACTGTGTTGAAGGTACTGCCAGAGGAATTGTCATCAACACTGGTGACCGCACTGTCATGGGTCGCATCGCCACTCTTGCCTCCAGCCTAGAAGGTGGACAGACACCAATTGCTAAAGAGATTGAGCACTTCATCCACATCATCACTGGAGTGGCTGTCTTCTTGGGCGTGTCCTTCTTTATTCTTTCCCTGATTCTTGGATATGGGTGGTTGGAAGCCGTCATCTTCCTGATTGGAATTATTGTCGCCAATGTACCTGAAGGTCTCCTTGCTACTGTAACTGTGTGTCTGACTCTCACTGCCAAACGAATGGCAAAGAAGAACTGCCTGGTGAAGAATCTTGAAGCTGTGGAGACTCTTGGATCAACCTCTACCATTTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGGATGACCGTCGCTCATATGTGGTTCGACAGCCAGATTCATGAAGCAGACACCACTGAGAACCAGAGTGGAACCACCTTTGACAGGAGCTCTCCTACGTGGTCTGCACTTGCACGTGTTGCTGGCCTTTGCAATCGTGCCGTCTTCCTAGCTGATCAGCGCAATGTGCCTATCCTCAAGAGAGACACAGCTGGTGATGCCTCCGAGTCTGCCCTCCTGAAGTGTATTGAGCTGTGCTGCGGTTCAGTCAATGAAATGAGAGAGAAGTACACAAAGATTGCAGAAATCCCTTTCAACTCCACCAACAAGTATCAGCTTTCAATCCACAAGAATCCCAATTCCTCAGAGCCAAAACACTTGCTTGTGATGAAGGGAGCACCTGAGAGGATCTTGGATCGATGCTCCACCATTTTAATTCAGGGAAAACAGCAGCCCTTAGATGAAGAAATGAAAGATGCTTTTCAGAATGCTTATGTTGAACTTGGAGGTCTTGGAGAAAGAGTCCTGGGTTTCTGCCACTTCTGCCTTCCTGATGATCAGTTTCCTGAGGGTTTTGCATTTGATACTGAAGAAGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGCCTCATGTCCATGATTGATCCTCCTCGTGCCGCTGTACCAGATGCTGTGGGCAAGTGCAGGAGTGCTGGAATCAAGGTGATCATGGTTACTGGTGACCATCCAATTACAGCTAAAGCTATTGCAAAAGGTGTCGGCATCATCTCAGAAGGCAATGAGACTGTTGAAGACATTGCCGCTCGTTTGAACATCCCGGTTGGAGAGGTTAATCCAAGAGATGCGAAGGCATGTGTGGTCCATGGAGGAGAACTGAAAAGTATGAGTGAAGAAGAGCTAGATGATATCCTGAAACACCATACAGAAATTGTGTTCGCCAGAACTTCTCCACAACAAAAGCTGATCATTGTGGAAGGATGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGAGTCAATGATTCTCCAGCTCTGAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGACGTATCCAAGCAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGATAACTTGAAGAAGTCCATTGCCTACACCCTGACAAGTAACATCCCTGAGATCTCACCTTTCCTTCTGTTCATCATTGCTAATATTCCTCTACCTCTGGGCACCGTCACCATTCTCTGCATTGACCTCGGCACTGACATGGTTCCTGCGATCTCGTTGGCCTATGAAAGTGCTGAAAGTGACATCATGAAGAGACAACCCAGAAATGCTAAAACAGATAAACTGGTGAACGAGAGGCTGATCAGTATGGCCTATGGTCAAATAGGTATGATGCAAGCAGTCGCAGGGTTCTTTTCCTACTTTGTAATTCTCGCCGAAAACGGATTCCTCCCCTCCGATTTAGTAGGAATCCGAGTCAACTGGGATGACAAATATGTCAATGATCTGGAAGACAGCTATGGCCAGCAATGGACATACGAGCGCAGAAAGATTGTGGAGTTCACATGCCACACAGCCTTCTTCGCCAGTATTGTGATTGTGCAGTGGGCAGATCTGATCATCTGTAAGACCAGGAGGAATTCCATTGTACAGCAGGGAATGAGAAACAAAATCCTCATCTTCGGCCTGTTTGAAGAAACTGCTCTTGCAGCATTTCTGTCCTACTGCCCAGGCATGGACGTAGCTTTGAGGATGTATCCGCTCAAACCGTGCTGGTGGTTCTGCGCCTTCCCATATTCACTTCTCATCTTCGTCTATGATGAAGCTAGAAGATATATCCTTAGGCGGAGCCCAGGAGGTTGGGTGGAACAAGAAACATACTACTAAAACATGAAGCAAACATTTTCAAGGAGACAcatatcaatatatttttaaatgatactgAATCTGGCCATTTTCAGTCAATAAAGCTGTTGAAGTGGA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000048828

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003014 lncRNA upstream 70461 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003013 lncRNA upstream 70461 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003012 lncRNA upstream 70461 1617203 ~ 1619314 (+) True XLOC_000034
TCONS_00002807 lncRNA upstream 111524 1571847 ~ 1578251 (+) False XLOC_000032
TCONS_00002806 lncRNA upstream 113385 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00000071 lncRNA downstream 24233 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000073 lncRNA downstream 84613 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000077 lncRNA downstream 192750 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00003015 lncRNA downstream 295557 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 317250 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000062 mRNA upstream 75275 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000059 mRNA upstream 718824 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 1081528 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 1081720 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 1086378 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000066 mRNA downstream 5981 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 83198 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 99135 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000075 mRNA downstream 132005 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000076 mRNA downstream 190578 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000061 other upstream 114212 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000060 other upstream 470970 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000053 other upstream 1113254 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 1143558 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 1174453 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000067 other downstream 5994 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 11538 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 12452 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other downstream 13048 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000094 other downstream 484541 2190700 ~ 2214397 (+) False XLOC_000046

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_04658984_04668843.mRNA True 3649 mRNA 0.46 23 CI01000299 4658895 ~ 4669022 (-)