RNA id: TCONS_00000044


Basic Information

Item Value
RNA id TCONS_00000044
length 2809
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_000020
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 494297 ~ 505620 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGGTGTCCAGCAGTGTTGTGTTCTGGAAGTGGAAAAGGAGTGTGCAGTAATGATGTCTGCTGAACTGATCATTAAAGATGTGTCAGTGGTGGCCGTGCGGGGCCCTGGCGATGGCATGGAGACAGATAAACCCCTGCCAGCCCCTGAGCAGCTGACGGAGGCCCCGCTCCAGAAGATCTGCTCTCCTAAACACAGCCCGAGAGTGGCCACCGGGTCTCCAGGAGTGCTGCACCTGGGCAAGGTGAGCCGGGACGCCTGTTTGGAGCTGGAGGCAGTGAGGATCGTGGTTCCCCGGGCTGCCATCATCCGCACCGGGCGCTCAGGGGCGCACACTGATGACAGGGGGTCTCCTCAACACGGGGACGAGCCTCCACCTGCTCCACCCTCACCTCCACCTCCAGCAGAGCCGCTGCAGGAGTACAAGAACAGCCTGGAGAAACTGCAGAGCTCAGAGAGACGCCTGCTGCAGGATAAAGAAGGCCTGTCCAACCAGCTGAGGGTCCAGACCGAGgtgAACCGTGAGCTGAAGAAGCTGCTGGTGGCGTCAGTCGGTGATGATCTGCAGTATCACTTTGAGCGCCTGGCGAGAGAAAAAAACCACCTGATCCTGGAGAACGAGACTCTGTGCCGAAACCTGTCGCACACGGCGGAGCAGCTGGAGCGCATGAGCATTCAGTGTGACGTCTGGAGGAGCAAGTTCCTCGCCAGCCGtgtgATGGCGGAGGAACTGACCAATGCCAGATCGGCTCTACAGCGGCAGACGCGAGATGCTCAGTGCGCCATTCAGGACCTGCTGAGTGAAAGAGAAGAGTTTTCCAGAGACATGACGCACACGCACAGGTGTCTGGAGCAGCTGCTGGTGTCTCTGCAGTGGGGGCGTCAGCAGACGTATTACCCCAGCGCTAAGCCGCTCAGCACTGGAGAACTGGCCACAGCCAATCACAAGCTGGCGGACGCCATCAACGCTCACCTGCTGGGCAAACTGGAGAACAGCGGCGGCAAGAAGAGCCCGAGCACTGAGATCTGCAACACACCGGCCGAGAAGATGGCGGAGAAGGTTCTGCGGAGTTTAGACCCGGTCTGCGTCTCCGAGCAGGAACACGACGCGTCTTCATCTGATTCGCCGTTTCTGCCCAACAGGAAGAGCATTGGCCGCTTCCACCCGTACACGCGCTACGAGAACATCACGTTTAACTGCTGCGAGCGCTGCCACGGGGAGATCATCGTTCTCTAGAGCCACGCTTCAGTATTACAGCAGAAACACACCAAAGACCAGCGctggagagagagacagagaaaacaTCATCAGGTCTGCTCTCCTACACACAGACTGATTAAAGACACAGCTCACCCTGAAGCCTGACAATTACCCCTGAGACATCAACAGTAGTCAACATGTGAAGTGGAGTTTTGTTTCAGGCGATCTTTTCTGATGATTTCAAATCTTGACTACTGTAGATCCAGTCAGAGGTATATAGTAAATTATCTTGGCCTTTTCAGCTCTATAATGGCAATAGGTGGgggatttattttcatttatttatttttctaatcaACAGTGCAAAAGAAGTCTAATAAAGCACATGCATTGTATGATATAAAGTGTCTTATGTAGCTCCAGGGGGTAAATAAAGCTCTCATATTAtgaatttatgcattttttaaatataaaaatattgttatttataactttataaaCCATTTCTCTCTGTTGTCGTCTTctgaatgttttgttttctcttcTTTGCACTTCAGCGTTTATTTAAACTGCGCATGTGCTTCACACTTGAGATTAAAAACACACTCCTGTCCAGCTGGTGGCGCTAATGCACTAATAAATACAGGAGTGTgtcttttaacttatttttaagtgttaaatGCATGCACAGTTGAAACCAATACAGAAGCACAGTGAAGAGAGAAATCAAAACACTCCTGTCCAGTTGGTGGCGCTAATGCACCAAAAATGCATCTTAAAGACAAACGACGCACAACAATTACGCAAATGAAATTAGAAAAATAATTAGAAatgaactttaaaaatgtaacttaaaattataattacaaactgcataataataataataataataataaaaaaccacTCTAATGCAccacaaaatgtgcattaaagatGAATGGTGGTCACCGGTAGTTACACAAAATAGTTTATAAGttttaaatattgatattttcCTAACAAAAAATGCTGGATTTACTGCAGAGACTTTTATTCGGCATGAGAGACACTTTTAATTAACAATAAATGCACTTTATTGGACATCTGATTTAAAAAACTGCCACCTGTTGCCTTTAGTAGAGCTGCAAAAGCCAAATATGATTTTCTAAACACCTCAGATTAGATTGGACTGAAAGAAGAGAGTCAAAGACACCTGGGATGTGTAAGTCATGGGATAATTCAGTGTTTTGGGTGAACGAACCCCTTTACAGAGCCTCAAATGAACTGTTATAGTGCAATACTCCTCGCCCTCTGAGAATGAGCAGCGTGAACATTCTGCTAGACGTCTCACTGTGTTTGAATATTGAAGAAATGCTGCATTAGAGTGAGTGGTTGATTCGTGGTGTAGATTTGACAGTGCGTGTGTGACTGATCTGAGTTCAGTgtttatttaatgcagtgtttctggATTATTATGTTGACTCTGATGCTGGATCATATTTATGCTTCATCAATATTCAGCTTTTTTGCATCACTCCCGGACCAGattctgtttttaaaacattttgctgatattttctctttgttgTGTTGCTCTCTAAATGAGCGAAATAAATAGTTTAGACTG

Function

GO:

id name namespace
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0060415 muscle tissue morphogenesis biological_process
GO:0007030 Golgi organization biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0000139 Golgi membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-010724-1 Acts upstream of or within Golgi organization; cell-matrix adhesion; and muscle tissue morphogenesis. Predicted to be active in Golgi membrane. Is expressed in head; notochord; and somite. Orthologous to human BLZF1 (basic leucine zipper nuclear factor 1).

Ensembl:

ensembl_id ENSDART00000109415

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 137706 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 137706 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 254561 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 258845 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 260735 227253 ~ 235533 (+) False XLOC_000015
TCONS_00000055 lncRNA downstream 75071 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 289359 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 289359 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 510195 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 510207 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000040 mRNA upstream 52509 418869 ~ 443759 (+) True XLOC_000019
TCONS_00000035 mRNA upstream 200211 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000045 mRNA downstream 8369 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000046 mRNA downstream 8384 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000048 mRNA downstream 18771 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000049 mRNA downstream 19204 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000050 mRNA downstream 27149 532766 ~ 549521 (+) False XLOC_000023
TCONS_00000036 other upstream 202374 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 483011 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000047 other downstream 8396 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 31972 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 70827 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 713074 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1069866 1575483 ~ 1575563 (+) True XLOC_000032

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05927821_05933216.mRNA True 3332 mRNA 0.40 6 CI01000299 5927314 ~ 5934832 (-)