XLOC_025004 (CR790363.1)


Basic Information

Item Value
gene id XLOC_025004
gene name CR790363.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 4269354 ~ 4270546 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049552
CAGTCCATAGCATCAGTGCCTTTGTCTTGCAGGAACTGCTGACACACTCCAGCCACATGAGGTCTAGCATTGTCCTGCATTAGGAGGAACCCTGGGCCAACTACACTGGCATATAGTCTCACAAGGGGTCTGAGGATCTCATCTCGGTACCTAATGGCAGTCAGGCTACCTCTGGCAAGCCCATGGAGGGCTATGCGGCCCTCCAAAGAAATGCCACCCCAAAATGGGTCATGCTGCAGGATGTTGCAAGCAACACAATGTTCTCCACAGTGTCTCCAGACTCTGTCAAGTTTGTCAGTGTGAACCTGGTTTTATCTGTGAAGAGCACAGGGTGCCAGTGGCGAATTTGTCTTGGTGTTCTTTGGCAAATGCCAAACGTCTTGCACGGTGTTGGGCTATAAGCACAACCCACACCTGTGGATGTCTGGCCCTCATACCACTCTCATGGTCTCTGTTTCTTACTGTTTGAGCAGACATATGCACATTTGGGGCCTGCTGGAGGTCATTTTACTGTGCTCTGCCAGTGCTCCTCCTGTTCCTTCTTGCACAAAGACAAAGGTAGCAGTCCTGCTGCTGGGTTGTTGCCCTACTACAGTCTCTTCCATGTCTTCTGATGTATTGGCCTGTCTCCTTGTAACACCTTCATGCACTGGACAATACGCTGACAGTCACAGCAAACTTTCTTGCCACAGCTCGCATTGATGTGCCATCCTGGATGAGCTGCACTACCAGAGCCACTCGTGTGGGTTGTagacagggccggcgcgtccatagaggcaacctagCACTGCCAGCATTCAAAAGTGACCAAAACATTAGCCAGAAAGCATAAGGACTGAGACGTGATCTGTGGTGAACACAGTGTCTTGCTAATTGCCTATAATTCCCTCTTTTTGTCTTTTCCATTTGCACAGCAGCATGTGAAATTGACTGTCCATCAGTTTTGCTTAATAAGTGGGTAGTTTGATTTCACAGAAGTGTGATTGACTTTGAGCTACACTGTGTTGTTTGAgtgttctatttattttttcaagcaGTGTATAATGATTCGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097364

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049552 True 1053 processed_transcript 0.48 2 4269354 4270546

Neighbor

gene id symbol gene type direction distance location
XLOC_025003 si:dkey-73p2.1 coding upstream 360 4266289 ~ 4268994 (+)
XLOC_025001 si:dkey-175d9.1 coding upstream 42930 4225128 ~ 4226424 (+)
XLOC_024999 BX005421.3 coding upstream 54449 4047789 ~ 4214905 (+)
XLOC_025000 LO018551.1 coding upstream 150459 4113551 ~ 4118895 (+)
XLOC_024998 BX005421.2 coding upstream 261540 3992590 ~ 4007814 (+)
XLOC_025005 NA coding downstream 25805 4296351 ~ 4300461 (+)
XLOC_025006 si:dkey-73p2.3 coding downstream 76308 4346854 ~ 4347932 (+)
XLOC_025007 si:dkey-73p2.3 coding downstream 133434 4403980 ~ 4426242 (+)
XLOC_025008 rangap1a coding downstream 231520 4502066 ~ 4530195 (+)
XLOC_025009 CABZ01046996.1 coding downstream 456075 4726621 ~ 4731396 (+)
XLOC_025429 BX649540.1 misc downstream 25978193 30248739 ~ 30249036 (+)
XLOC_024992 NA non-coding upstream 595180 3669634 ~ 3674174 (+)
XLOC_024987 NA non-coding upstream 696523 3571827 ~ 3572831 (+)
XLOC_024984 NA non-coding upstream 779694 3483002 ~ 3489660 (+)
XLOC_024981 NA non-coding upstream 988480 3279609 ~ 3280874 (+)
XLOC_025010 NA non-coding downstream 512317 4782863 ~ 4785568 (+)
XLOC_025011 NA non-coding downstream 687599 4958145 ~ 4958564 (+)
XLOC_025013 NA non-coding downstream 731053 5001599 ~ 5009133 (+)
XLOC_025014 CU681842.1 non-coding downstream 764482 5035028 ~ 5042164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1056058 NA non-coding NC_048576.1 CM023230.2 27731420 ~ 27771976 (-)
mexican tetra (Astyanax mexicanus) G296203 NA unknown NW_019172826.1 APWO02000044.1 2728308 ~ 2729150 (-)