XLOC_025010


Basic Information

Item Value
gene id XLOC_025010
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 4782863 ~ 4785568 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052550
GAGAGTGATATTTTTGATGATGTTCTTAAAAACAATAGATCAAGTCAGCCCACTCTTATTCACCCGATGGATGTTCAGATGGCTGTGTTTCATCGTGCTGATGGTTTCCTGAAGCAGCTGATGGGCACTAAACTGTCCCAGTGTCAGTTCGCTCTACCTCTGCTTGTTCCTGATCCAGAAACACAACAGATTGAGTTTCCTCTCTGGACATTCAGACAAATCAACAAGAGCTGGAAGATCAGAAACACCAACAATGAAACCATCAGTCAAACCCAGCCCATCTACAAGGCACAAACTCCAATGGTGTTTTTCTTCAGGTTTGACTCTGTGTCTTCATCCAAGTCTCAGCTGATGAACAGTCTGATCAATGACAAACACAACACGTTCTTCCACAGGAACTGCCCAGGCAGCAGCAGATCCAGAGTCCTGATGGATGGAGTGGTGGAGATCGCCTGGTTCTGCCCTTCTGGGAGAAACACAGATACATTTACTGACTGTGTGGCCTTCTGTAATCTACATGGAGATGCAGGAGACCATGAGAAACAGTGGAAGATCCTCACTGAGATGGCCTCAGTCAATGTGGTTCTTCTACAGCAACTTCAAAAGAATAAAAGAAGCACAGACATGATCCAAAGCCTGTACAAGAACAAAAAGccacttatttttctttttactgaaGATGAGTCTGTTGTAACTGAGATGAAGAAGGGGAAATACAAGATCGGTCTGAAAGACAGAAATCAGTCAGAAATATCTGAAGAACTCAGAGGAGTTATAAGTGATTGTCTCTCAGAATCATCTTCCACTGTCAGACTTGTAGATGTGTCCAAACACTCGGACATGAGAGTAGATGAGGAAGTTAATAAATACTGCAAGAAAGGAAGAGCAGCAGCACAGCAGATGATCAGTTTACTGGAGGAGAAAAAACTGACAGAAATCAAAGAATCATTTCTGCCTCATCAGGGGAAACTGTGGCATCAGTGGAGTCAGAAGAACAAAGAACTACATCGACCTCAAGGAGATGAGATAGAAATGGAAATCAGTAGAAAACAAAAAGCGATGATGAAATTTCGTAAACAGCAGCATGAGTCTGACATCAGTGAGTTTATAAAGCTCTTTGTTAAAAAACTTAACAAAGATGATAAGCATGAAAAGATGTTTTTCCTCAAATGGCTCAAAATTCTCTTGGATGAACACACATCAACTGAACTTTCAGCTCTACACCACAAATATAATGAAAAGTGGTCAACAGTCCTGAAACAACAAGCTGAACTGGAGAGGATATCTGAAGATCTGCAAGCTGCAGcctttggtctggagcacatcATGAGGGAGATCGGTCAGATCTATGAATCATGTTCATCTGTGAAGCAGAACAAGAAAGATCTGCCGGTTCACTTCTCTTCTCTCCCGAGTCTCGCAGCAGAGATGATGATCTCTGGGTTTCCACTGGAGCTGATGGATGGAGATGCTGCTCATGTTCCTCTGGTCTGGATCTCTGCTGTTCTTGATGAACTCGTCCAGAAACTGGGAGACCAGACCAGAGTCTTTGTGCTGTCAGTTTTAGGGATCCAGAGCTCTGGGAAATCCACCATGCTGAACGCCATGTTTGGACTCCAGTTTGCAGTTGGTGCTGGCAGGTGCACCAGAGGAGCTTTCATGCAGCTGGTCAAAGTGTCTGAGGAGATGAAAACACAGATGAACTTTGACTATATACTGGTTGTTGATACTGAGGGTCTTTGTGCTCCAGAACTGGCTGGAAGATCAACAAGACATCATGACAATGAATTGGCCACATTTGTTGTCGGTATTGCAAATCTAACCTTAATCAACATCTTTGGAGAAAACTCATCTGAGATGCAGGACGTTCTTCAGATTGTGGTGCAGGCCTTCTTGAggattaaaacatttaaacaaagcggcagttgtgtgtttgtgcatcagAACATCTCTGACTTCATAGCTGGAGAGAAAAACAAAGAAGGAAGGAGACGACTGCTGGAGAAACTGGATGAGATGACGAAACTTACTGCTGAGGAGGAAGGCTGTGATGCAGAATTTTTTGATAAAGTCATAGGATTTGATGTTCAGAATGATGTAAAGTATTTTGCTCAGCTCTGGGAGGGCAGTCCACCAATGGCTCCACCAAACCCAAAGTATTGTGAGAATATTCAAGATCTAAAGAAAACCGTTATAGCTCATGCCTCAGAATCACATAGAACAGGGCTGAAAGACTTAAGAGATTGTGTCAAAGATCTGTGGGAAGCTTTACTAAAGGAACGATTTGTCTTCAGCTTCAGAAATTCTCAGGAGATTTCAGCTTATAAAAAACTAAGGACCCAATACAGCAAGTGGTCCTCAAGTGTTCATAATGCTATGGAAAAAATTGAGAACAAACTACAAAATGAAATAGAAAATGAAGTAATTCATGAGGTTGAGGAATCTGATCTTCAAAGAGAACTGAAGAAGACCAGTGAAGAAGTAGAAAAATCAATGACTGAATTCTTTGAGAAAGGCAAAGATAAAGATATACTGATACAGTGGAAAGCATCATTTGAAATCAAAATCAAAGAGCTACAAGAGAACATTGTGAGAGAAGCAATAAGGAAATTAAATGAGATTCTTCAGCAACGAGACCAAAAGAAAAACACTGATGCTCAAAAGACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052550 True 2667 lncRNA 0.42 2 4782863 4785568

Neighbor

gene id symbol gene type direction distance location
XLOC_025009 CABZ01046996.1 coding upstream 51467 4726621 ~ 4731396 (+)
XLOC_025008 rangap1a coding upstream 252668 4502066 ~ 4530195 (+)
XLOC_025007 si:dkey-73p2.3 coding upstream 356621 4403980 ~ 4426242 (+)
XLOC_025006 si:dkey-73p2.3 coding upstream 434931 4346854 ~ 4347932 (+)
XLOC_025005 NA coding upstream 482402 4296351 ~ 4300461 (+)
XLOC_025011 NA coding downstream 172577 4958145 ~ 4958564 (+)
XLOC_025012 CABZ01117706.1 coding downstream 211977 4997545 ~ 4998034 (+)
XLOC_025013 NA coding downstream 216031 5001599 ~ 5009133 (+)
XLOC_025014 CU681842.1 coding downstream 249460 5035028 ~ 5042164 (+)
XLOC_025015 NA coding downstream 263772 5049340 ~ 5054209 (+)
XLOC_025429 BX649540.1 misc downstream 25463171 30248739 ~ 30249036 (+)
XLOC_025002 NA non-coding upstream 487938 4237836 ~ 4294925 (+)
XLOC_025004 CR790363.1 non-coding upstream 512317 4269354 ~ 4270546 (+)
XLOC_024999 BX005421.3 non-coding upstream 567958 4047789 ~ 4214905 (+)
XLOC_024992 NA non-coding upstream 1108689 3669634 ~ 3674174 (+)
XLOC_025019 NA non-coding downstream 669589 5455157 ~ 5467797 (+)

Expression


Co-expression Network