XLOC_025136 (JMJD8)


Basic Information

Item Value
gene id XLOC_025136
gene name JMJD8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13511984 ~ 13521115 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049665
tttttGTATGCTTATGCAAAACCAGTTATACTCCGAGGGCTTACAGACAACACAAAATTCCGCTTCCTGTGCGCCAAATCCAGTCTGTTGAGAGAATATGGAGATAAAACAGTCCGCCTCAGCACAgccaatacacactcatacaggAAAGTGGATGTCCGGTTTGAAGAATTTGTGAAGTTCCTGCTGACGCCTCAGTCTGAAGACACGCTGGGCAGTGATACGCTGTACTTCTTTGGGGACAATAACTTCACTGAGTGGCGTTCTCTGTTTGAGGAGTATAAAGCACCACCTTTTTCTCTTCCTCTCACCCACCCTGCGTACAGCTTTGGGATTgctgGACCAGGAACTGGGGTCCCATTTCACTGGCACGGCCCCGGATACTCTGAAGTCATCTACGGCAGGAAGCGCTGGTTTCTTTACCCACCTGACTTGGCACCTGAGTTTCACCCAAATCACACCACTCTCTCCTGGGTCTCACAGTCGTACCTGGACCTGGAGCTCCACCAGCGGCCTCTGGAGTGCACGATACGACCCGGAGAGGTGCTGTATTTTCCTGACCGCTGGTGGCATGCAACTTTAAATCTGGACACCAGTGTCTTTATTTCCACTTTTCTGGGATGA

Function

symbol description
jmjd8 Orthologous to human JMJD8 (jumonji domain containing 8).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120917-1 Orthologous to human JMJD8 (jumonji domain containing 8).

Ensembl:

ensembl_id ENSDARG00000104841

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049665 True 624 mRNA 0.50 8 13511984 13521115

Neighbor

gene id symbol gene type direction distance location
XLOC_025135 CABZ01079251.1 coding upstream 22039 13482542 ~ 13489945 (+)
XLOC_025134 NA coding upstream 34111 13476872 ~ 13477873 (+)
XLOC_025133 zgc:77748 coding upstream 38787 13469704 ~ 13473197 (+)
XLOC_025132 si:dkey-117i10.1 coding upstream 65899 13440900 ~ 13446085 (+)
XLOC_025131 dre-mir-27c coding upstream 98771 13406451 ~ 13413213 (+)
XLOC_025137 si:ch73-106n3.1 coding downstream 38084 13559199 ~ 13567762 (+)
XLOC_025138 si:ch73-106n3.2 coding downstream 48691 13569806 ~ 13576052 (+)
XLOC_025139 hspbp1 coding downstream 79599 13600714 ~ 13618382 (+)
XLOC_025140 pglyrp6 coding downstream 103700 13624815 ~ 13633331 (+)
XLOC_025141 si:ch211-194b1.1 coding downstream 116268 13637383 ~ 13684397 (+)
XLOC_025429 BX649540.1 misc downstream 16727624 30248739 ~ 30249036 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 105661 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 105902 13389862 ~ 13406082 (+)
XLOC_025128 NA non-coding upstream 144476 13360703 ~ 13367508 (+)
XLOC_025145 NA non-coding downstream 507128 14028243 ~ 14073770 (+)
XLOC_025147 NA non-coding downstream 679928 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 non-coding downstream 721004 14242119 ~ 14248538 (+)
XLOC_025149 NA non-coding downstream 730129 14251244 ~ 14254765 (+)
XLOC_025151 NA non-coding downstream 756535 14277650 ~ 14287841 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000113_02166259_02170108 JMJD8 coding CI01000113 null 2166259 ~ 2170275 (+)