XLOC_025147


Basic Information

Item Value
gene id XLOC_025147
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14201043 ~ 14202519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052329
GTCTTaaaacttccgtttcagtcgcctatgggagaaatgacaaggaataataaatggcaaaaaacggtcaaactacttgctctacaaactaatgtttgcatgactatacagaccaagtaaaataatataacaaggaaatgtcagtttgcaacatcaaacagcgaaacgagcagtttttaatgtctaaaaatgaatggaagtgaatgagaccggaagtctcgtgccaaaaagattcaaatggcagcgcccgctcgtctgtggagaataaggtcaataataaaatcaaaagttATTACTTctcagtatattttatttatgtttttaggtTAAAGCTTCATGAAGAGCCCCTAAAACAAATCGCAATCCTACTAGAATTCTTCCATAAAGCATCTCAGTGCTGTTGCACTTTTTCTTGTGTGAGAAATGAAAACAACTGCGACATATGCAAGGCACTGCTGGATCTTTGCTCACATGTGAAGAACTACGAGACTCAAACAGGCAGGAGATTCCTACCAGCATTACAGTTAGTTTTCCAGACTCCTGATGTCTGGATCATAGATCTCTCAGAGAGAAAGACCTCTCTCCTTCTGGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAGCTGAGAGGATGTTCAGAAGAAGAGAGTGAAGTGAGGAGTTTCCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGGTTTTGGCAGATGGGTGATAAAGGAAAAAGATTCCTGATGAATCTCATTCCTGCTGCAGTAGAAAATGACACAGACAAAGGAACAAGTTTCTTAAATCTGCTGTCGTCTGTGTGCAGTTATAAAGGATTTCCTCTTGAAGAGTGCAATAATGATCTTATTCAGAGTAATTTCCTGCTGGATCTTTGTGTACATTTGAAGGACGTTGAGACTCAAACATGCAGGAGATTCCTTCCAGCATTGCAGTCAGTTTTCCAGATTCCTGATGTTTGGATCATAGATCTCTCAAAGAGAAAGACCACCATCCTTCTGGAAGTGCTGAAACTCCAAATAGAGAAGAAACCAGTAGAGCTGAGAGGATGCTCAGAGGAAGAGAGTGAAGTGAGGAGATTCCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGGTACTGAACTTTTGGATATTCATTTTAATTGCCTACTTCTCATTTAATATCACTTCACTGCAAGGtaa

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052329 True 1194 lncRNA 0.40 2 14201043 14202519

Neighbor

gene id symbol gene type direction distance location
XLOC_025146 si:ch211-108d22.2 coding upstream 12021 14157090 ~ 14189022 (+)
XLOC_025145 NA coding upstream 127273 14028243 ~ 14073770 (+)
XLOC_025144 syce2 coding upstream 265206 13929860 ~ 13935837 (+)
XLOC_025143 ilf3b coding upstream 299969 13842554 ~ 13901074 (+)
XLOC_025142 ptger1b coding upstream 363980 13830599 ~ 13837063 (+)
XLOC_025148 AL954138.2 coding downstream 39600 14242119 ~ 14248538 (+)
XLOC_025149 NA coding downstream 48725 14251244 ~ 14254765 (+)
XLOC_025150 si:ch211-108d22.1 coding downstream 56596 14259115 ~ 14260797 (+)
XLOC_025151 NA coding downstream 75131 14277650 ~ 14287841 (+)
XLOC_025152 plppr2a coding downstream 115283 14317802 ~ 14373165 (+)
XLOC_025429 BX649540.1 misc downstream 16046220 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 723170 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 787830 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 794720 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 794961 13389862 ~ 13406082 (+)
XLOC_025154 CU639471.1 non-coding downstream 196706 14399225 ~ 14399652 (+)
XLOC_025164 NA non-coding downstream 1027433 15229952 ~ 15231838 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G284261 LOC107564376,LOC108415153,LOC108415460,LOC108414004,LOC108414272,LOC101884073,LOC108272973,LOC108414394,LOC106595671,LOC106594638 non-coding NW_019172578.1 APWO02002176.1 37401 ~ 64419 (+)