XLOC_025164


Basic Information

Item Value
gene id XLOC_025164
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15229952 ~ 15231838 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052623
GATCATGGATCCTAAGCTGAAGCGGTAAAATATACAATCGTTGCGTGCCGTATAAGCGAGAGGACATTCGGCTCCTCTGAAACATGGTCATTCAACATCAAGCAGAAAGAGATTCTTAAGAAACGGCAAAGAACAATATGAAATGCTGGCATTGTCCTCGTTATTACGTAAGAATGTGAAGAGATACTATGGCAACTGGTGGAAACGCGAGGTGACGTCACATTATGGGATGTATTTTGGCACTGAATCTGTTTTATATACTCGATATTCAAttcaaaatatttacattcaatATGTTCTCGTCTTGATGTATGCGTCTGTATACAAACATGGGGACATGAGAGTATAGGTTTAACATTTCAGATTatatacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaattgtttatgtggtttacgaggacaaaGTATAATAACATCACTATGACCAAATTGTACTCaattatgaggacatgccttacgtccttgtaattcaaaatgcagaaaaaaacataatataatagtgTTTtggcacttttaaaaaaaaaaaaatgtcaagggTTTTCTGgaaaggttgggtttagggttagagtAAGGTGATATAATAAGTATTTTTCAGTATAAACTACATTAGGCCTATGAAGAGTCCTTATAAACCATACATACAAGTATGTGTACTTGCTTATATGGTTTAAAAGGACACCAAATTGAACAATGACAAAAGTAGGACAAGTTGTTCTCTATTAAAGTGGTTTGTGAGCACATGTTGTATGTCCTAGTAATCCAAAATGCACAACAAATCAATGATGTTTGGCACTATCTTAAAATTTACCAGTgaaggttgagtttagggttagggtaaggTGACATATTAAGCTTTTTCCAGTATAAATGACATTATGCCTATGGGGAGTccttataaattatatatacaagTGTGTGTACTTCCTTATGTGGTTTAAGAGGACacaaaattgtataatgacataAGTATGATGAGTTGTACTCTGTTaaagtggtttatgaggacatgtcttaTGTCATTGTAATCCAAAATGCATAACAATCATAATATAATGGTGTTTTGACACTTTCTTAATAATTGCTAGTGAAGGTAAGAGGATTTAATAAGCGTTTTTCAGTATAAATTACATTATACTTAtggagagtccttgtaaaccatatatatatatataaatcatatatacaagtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052623 True 1262 lncRNA 0.34 2 15229952 15231838

Neighbor

gene id symbol gene type direction distance location
XLOC_025163 tspan10 coding upstream 43660 15176737 ~ 15186292 (+)
XLOC_025162 nfixb coding upstream 171488 14768364 ~ 15058464 (+)
XLOC_025161 zgc:158403 coding upstream 541842 14641962 ~ 14688110 (+)
XLOC_025160 tspan35 coding upstream 591553 14611299 ~ 14638399 (+)
XLOC_025159 znf653 coding upstream 623834 14571813 ~ 14606118 (+)
XLOC_025165 asphd1 coding downstream 40105 15271943 ~ 15284693 (+)
XLOC_025166 cabp5b coding downstream 64986 15296824 ~ 15317392 (+)
XLOC_025167 sh2b1 coding downstream 126621 15358459 ~ 15392466 (+)
XLOC_025168 atxn2l coding downstream 162590 15394428 ~ 15425689 (+)
XLOC_025169 NA coding downstream 273346 15505184 ~ 15506157 (+)
XLOC_025429 BX649540.1 misc downstream 15016901 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 830300 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 942111 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 975187 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 981414 14242119 ~ 14248538 (+)
XLOC_025147 NA non-coding upstream 1027433 14201043 ~ 14202519 (+)
XLOC_025170 NA non-coding downstream 285714 15517552 ~ 15517899 (+)
XLOC_025172 NA non-coding downstream 386440 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 407614 15639452 ~ 15646667 (+)
XLOC_025174 NA non-coding downstream 453524 15685362 ~ 15719823 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G338390 pipnb,pitpnbl,LOC103031125,LOC108410611,LOC106600642,LOC105028335,LOC107567088,LOC107552474 non-coding NW_019172936.1 APWO02000145.1 196879 ~ 275971 (+)