XLOC_025172


Basic Information

Item Value
gene id XLOC_025172
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15618278 ~ 15621754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052625
GCATATTAAAAGAAGCAGAAAACAGCTGTCAATACTGGCACTTGTTTAGTTGTATCCTACTGATCTGAAGACAGGGCACACAACAGGAACatgaaataaattttaacaaCGCCACAAACACACTGCGCTCGAGTTTTCTGAGGACATGAAAATCATCATGTGACTTGTTACGGTCTCTCGATCTTGCCCGTGGGAGTCTCCCAGCATGGCACATTTTAGACGTCTCCGCTAATAGAGCAGATAATTTGACTGATGTTCACCGATCAACAGGGAAACCTTCCCACAAGTCTTTCCTGTTGCTCAACACTTGTTTAACCCGTTTAATCccaacttttttcttttcttttgggaAGAAATACCCATTTTAAATGAGAAATGTAGATTGTTTTGAATGAAATGTATCAATATCACACGAGCAGATGAGCCACTTTTTCACTTTGCATTTTCATACGGTTTGGTTTTGCACTGCAGTTTAGTATCGCTTAAAGTGGTTTGGTTTATCACTATAACTGTGCCAGTTCTTCTGCAGTGACTTTCTGAAAAATATCTTCATTCCGGGTCGTCCCATCTAGCTCTATTTGGATCCTGCAGCAATTAGAGGAATTTATGGGCCTCTTCTACTGCGATGCAATAATACTGAACtgctttgatgacagactttggctgaggcatTTTAGAATAACCAAAACCACATTTCAGAATGTGTTTGGTCTGTTGGTTTGTTTATTAATGCCGTCCCATtaatctcagttttttttttaaattagttgtttaagtttaaaacgtttttaaaacggAGCTAGTTTGtattaaagacagtaaaatcactatcTCATTCTTAACCACTATAATCATAACGGTATATGTGGTGTCAGTAAACGCGTttatgtgtgtactgcaaacaggCTTTGTATGAGACTCattatttcagaaaggcttgaataaactccaccacaaatacatcaaataaacttagtatttttgactaatgagctggatttcagcttcatccgtgtctgtctctatcactgactgctgtttatctgacgtaatgcAGAAGCAGAAGACGCGtatgtgggaatggtgggcacCAAAAtgttctggaggctataataaattatctgatgggtattttgagatgaaactttacagacacattctggagactccaaaggcttatcttacatcttgtaaaaaggctaggtgccctttaacttAAATGTCATTAAACGAGTCTACGCCGTTTTTCAGCACGACATAGCACATAAAATACAGCTACCCTCTCAATAACATCCATGTTAGCCGTTTAGCTATGAAACTAGAGTGATTTCGTATCTTTTGATAAGTGAGTTTTGTGTGCAAAAGAAGTGAATTTCATGCACAACTGAAGCGAGTAAACTTGAAAGTGTCTAATTATGTGCAAACAGGAATGTGTACAATCCCATTATCTTTTGCAGCACTTTGTACAAGAACGCCATGTTTCATCAATATTAGTCCCAAAGCTGTAGACCAATCAGATGAGCTCAGGGGCAGGGTAAGCACTGCAAACTTGAGTTTAGAGCAGAGCCATAGAGAGAAAGAGTTGCAACAAGTATACTTACTCCAACGGAATGTTGTTTCAACagcaatagactgatttcacgcggacaccatttttttaaaaagcgaaatcgaggctgcggcgGGAAGAAACTTGAAAGTGTCGTTGGAAGTTacataggaacgttgtgtacctggctgtatatcttatcagtgaagagaaagtgacacaaatttatcatttcactgCCATCCGAGTGACTTGAAGGTCCGTTCTggatgaatggtgaaaataaaaagggatatcagagcttattttcagctaagttaagggaaatggcactagtaagctaacgttttctttcccaaacatgttttagatgccatttatcaaactcaagttaatgaactatttctttcactatattagacttgtctcGATACTGACTTAAAAGAAAAACcgtcaatttcccgctaacatttaaggcactgttgataccgttcttaaaacagcgcttatttgccattgtgttcatgtgctcaacagaaatgactgtgattggccgaggaggtcatcagttcaccctccgctgtttactgagttcaaacacagacgagcgatctgcttgataaCTCGACTGATCGTCatggctgcttcgcgctccagtctccgagtatctgtgtttgcactcggtgaagagcggtaaactgatgagaactggtgaatactatggtaaatcagcgctgtttatgaACGCTCTCAGCGGCGAttgaatgttagcaggaaatggacgtttttaaatcttcagtaccgggacaacactattacacaTAACACGAGGgtgtgtgctacagaggactgcagtgttttattactcaccgggttacataagCTGAAGCAGGGAGGCCTCCCCACGGTGTTTACCTGccgccatgaactgaagcctaggaggacacttgagcatattactcttacagagatagcgatgttgtttgatgctcaattattttttattgtttaaaataaacttactgaattatattattgtgatgtttacaccattcctgcatttttaaatctttgcaacagctggaggtttgtagtccacagtatgttactgcaatgtttacagagctggtcctatacttcccaccgcagcctcgctttggttctttaaaatggcggtcGCGTCAAATAAGCGTATAGTGGCTCATGCAAATCAAAGTTTCTAAAAACAAGATTGTGGATATGTTAAAATATTATCTAACATTACTGAATTGATCACAAAACACTTCCTGAAACTCTTTGAGTCTACATGAATGACGTGACAATTAAACAGTTTGGACTTCTG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098657 import into cell biological_process
GO:0055065 metal ion homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0140115 export across plasma membrane biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030003 cellular cation homeostasis biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0006873 cellular ion homeostasis biological_process
GO:0006875 cellular metal ion homeostasis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0022804 active transmembrane transporter activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052625 True 2891 lncRNA 0.39 2 15618278 15621754

Neighbor

gene id symbol gene type direction distance location
XLOC_025171 doc2a coding upstream 10112 15550522 ~ 15608166 (+)
XLOC_025170 NA coding upstream 100379 15517552 ~ 15517899 (+)
XLOC_025169 NA coding upstream 112121 15505184 ~ 15506157 (+)
XLOC_025168 atxn2l coding upstream 192589 15394428 ~ 15425689 (+)
XLOC_025167 sh2b1 coding upstream 225812 15358459 ~ 15392466 (+)
XLOC_025173 NA coding downstream 17698 15639452 ~ 15646667 (+)
XLOC_025174 NA coding downstream 63608 15685362 ~ 15719823 (+)
XLOC_025175 phb coding downstream 115057 15736811 ~ 15746999 (+)
XLOC_025176 BX914211.1 coding downstream 133969 15755723 ~ 15795396 (+)
XLOC_025177 phospho1 coding downstream 184163 15805917 ~ 15811037 (+)
XLOC_025429 BX649540.1 misc downstream 14626985 30248739 ~ 30249036 (+)
XLOC_025164 NA non-coding upstream 386440 15229952 ~ 15231838 (+)
XLOC_025154 CU639471.1 non-coding upstream 1218626 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 1330437 14277650 ~ 14287841 (+)
XLOC_025180 NA non-coding downstream 244167 15865921 ~ 15866402 (+)
XLOC_025183 CR387933.1 non-coding downstream 433255 16055009 ~ 16055732 (+)

Expression


Co-expression Network