XLOC_025175 (phb)


Basic Information

Item Value
gene id XLOC_025175
gene name phb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15736811 ~ 15746999 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049720
CTCATGTTGACACTGTTCTGCGCATGCGCAAGCTCCACCTGCTCATGTGTTTCTTGCGCAGGCTCCGGTGGAGGTCACTGTGATCATTCAGCGCAGCGGGACTGTCACTTTGTTGTCATGGCGAAGCTCTTTGAGTCCATTGGGAAGCTGGGATTGGCCTTGGCCATTGGAGGAGGTGTTGTTAACTCTGCTCTGTACAATGTGGATGCGGGACACAGGGCCGTCATCTTTGACAGGTTTCGAGGTGTTCAGGATGTTGTTGTTGGGGAAGGCACACACTTCCTTATACCCTGGGTGCAGAAGCCAATCATCTTCGACTGCAGGTCTCGACCACGCAACGTACCCGTCATTACCGGTAGCAAAGATTTGCAGAATGTGAACATCACACTGAGGATCCTGTTCAGACCGGTTGCAGGACAGCTGCCGCGCATTTTCACCAGTATCGGAGAGGACTATGATGAGAGAGTTCTGCCCTCCATCACCACTGAAGTGCTGAAGTCTGTAGTGGCCCGTTTTGATGCGGGTGAGCTGATCACTCAGAGAGAGCTGGTGTCCAGACAGGTCAGTGAGGATCTGACAGAAAGAGCTTCCACCTTCGGCCTCATTCTAGATGACGTCTCACTGACACATCTGACGTTTGGCAAGGAGTTCACTGAGGCTGTGGAGATGAAGCAGGTCGCACAGCAGGAGGCCGAGAGAGCCAGATTTGTTGTGGAGAAGGCGGAGCAGCAGAAGCAGGCGGCCATCATCTCAGCCGAAGGAGACTCTCAGGCTGCGCTGCTAATCGCCAACTCTCTGGCTGAAGCTGGCGATGGTTTGGTGGAGCTCAGGAAGCTGGAGGCGGCAGAGGACATCGCTTTCCAGCTCAGCCGCGCTCGTAACGTCACCTACCTCCCGTCCGGACAAGGGACACTCCTGCAGCTCCCACAGTGACCCCAaacctagacacacacacacacactagcttcACTCTTTCTGTTCTACGTTTGATTACTTTCAGAAAACATCATGCGTAAGgctcatttaaagggatagttctctcaaaactaaaaatgttgtcatcctttacttgtttcaaaccttaacagaaaatattttgaagaatgttggaagtatttgtttttctgacTATGATGGTCGATGGTTGTGGGTTTCCAGCATTTTCCAAAGTgtcatatttttatttgctttgcgGAATAAATCAATTCATCATGCTTTGGAGCCTCTTGAGGATGAGTTGGTAGGAGTGAATATTCATatttatgtgaactatccctttaagtagctTTTCCAACTTTAAAGAGACAACAACACTCTTTTACTTCCTGAAAGTATGAAGTGCCGCATGCTGGTTTCAGCTTTTGGAAAGAGTAAAGTGAAACCAGGATGcaaataaaatgcacaaaaatttgcatttcaaatgtttttctcTGGTAATTTTGAGATGATATCATTCAAAACACACGTAAGCAGGTTCAGTTGAGTTCTCCACATGCAGTAAGTGATCTGAATAGCTTGTAAAGTTAAATTGTGCTTCGAGTAGTGAAACACACAGACCGTGCTGTCAGTGTGTGTTATTATAAGGATGATCAACATTAATATCTCCCTCTGCTGCTGCAGGACTGACTgtgctgttgctgttgttttgGTTTGAATGTGTTTTGTTCTTGTTCGTGGCAGAAGGAAAGCCTTTGTGATTCACAAACGGCGAAGTGagaaaataatcaataaacaattattcatttatattaaaccAAAACGAA

Function

symbol description
phb Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in breast cancer and sporadic breast cancer. Orthologous to human PHB (prohibitin).

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6577 Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in breast cancer and sporadic breast cancer. Orthologous to human PHB (prohibitin).

Ensembl:

ensembl_id ENSDARG00000057414

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049720 True 1763 mRNA 0.46 7 15736811 15746999

Neighbor

gene id symbol gene type direction distance location
XLOC_025174 NA coding upstream 16988 15685362 ~ 15719823 (+)
XLOC_025173 NA coding upstream 90144 15639452 ~ 15646667 (+)
XLOC_025172 NA coding upstream 115057 15618278 ~ 15621754 (+)
XLOC_025171 doc2a coding upstream 128645 15550522 ~ 15608166 (+)
XLOC_025170 NA coding upstream 218912 15517552 ~ 15517899 (+)
XLOC_025176 BX914211.1 coding downstream 8724 15755723 ~ 15795396 (+)
XLOC_025177 phospho1 coding downstream 58918 15805917 ~ 15811037 (+)
XLOC_025178 natd1 coding downstream 70645 15817644 ~ 15824100 (+)
XLOC_025179 tmem11 coding downstream 81427 15828426 ~ 15836140 (+)
XLOC_025180 NA coding downstream 118922 15865921 ~ 15866402 (+)
XLOC_025429 BX649540.1 misc downstream 14501740 30248739 ~ 30249036 (+)
XLOC_025169 NA non-coding upstream 230654 15505184 ~ 15506157 (+)
XLOC_025183 CR387933.1 non-coding downstream 308010 16055009 ~ 16055732 (+)
XLOC_025184 NA non-coding downstream 406225 16153224 ~ 16161459 (+)
XLOC_025185 NA non-coding downstream 439594 16186593 ~ 16241340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000035_00204613_00209263 PHB coding CI01000035 null 204613 ~ 209858 (+)