XLOC_025178 (natd1)


Basic Information

Item Value
gene id XLOC_025178
gene name natd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15817644 ~ 15824100 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049726
CTGGATCAGATGTTCGTCCTGTCCTCGGTGAGGCATGAATGCAGTAGGATCAGCCGTGgcacagtgacacacacacagcttccCCTCCGACAGCAGACATGGCCCAGGCTGCACAGATAAACGTCCTCGATATCAGCACTCGTCTACGGGTGGAGCACGACAAGAAGAGACGACAATTCAGCATCCGTTTGAACGGCTCCCATGACAAGGCTGTGCTGCTGTATGAATATGTGGGCAAGAAGACGGTGGATTTGCAGCACACGGAGGTCCCTGAAGCTTACAGAGGACGAGAGATCGCCAAACACCTGGCCAAGGCTGCAATGGATTTTGTGGTTGAGGAGGACCTAAAGGCCCATTTAACCTGCTGGTACATCCAGAAATTCGTCAAGGAAAATCCTCACCCCCAATACTTGGAGCGCATCCTCCACTGAACACGTCGAGGATCTCTCTCTCGATTCTTAACAGGATGAATTGGGATTGGGTGGGATGGGTATCTGTTGGGTGTCCCTAATCTGTCTTGAAACTCCACAAAAGAAagagatttattttttgtgtgtgtttgcgagaGTGAATGTGACTGAAGGAGGGGAAAAGATCTGACTACAAAGCTGTGTAAACGTTTTTCTTAGGAAAGAGGAGCGTGTGGAATTTGAGGTGGGTTTTTGACTCCCAGTTACTCAAGCGGACTTTAAAGCCAATCCACAGAAGTGAGAGGATTTTGACCGCCGCTATGAACTCACAAATATCAGCGGTTAAGAGTGACATTAGACTCCGTATGCCTTTCTGGCTTCGCGCCTTCAGATTCAATGGTGCTGATAAGAGAGATACACACAATTATGATACACCTTCATGCACACTCAGCCTGGAGTTTTAGGGACGCCACAATCAAACCGTCCCACTGTTGAATTCTGTGCGTGATCTATGCTGTGTATCTGTGTGTACTAATGCCAGTGAAGAGCTCGGGCTCTGGAGACAATCGCCTGCCCATATATTCGCGGGACTGAACCTCTCAGGATGCACACTTTATAAACAACAAAAACGCACCTCTGAATAGAGCAAAGATTCTCAGATCTGATACTTGAGATCCACTTGTCCTCCAACTCTGATCCAACACCTGAATCAGCTGATAAAGGCCTTCAGGATTACTGTACACATTCAAGCAAGTTAAGGgggtagttcaccctaaaattaaaattagcGCAtgatttactcgccctcaaggcATCATAGGTGTATATGAGTTACTTCATTTAGTCAAACATGATGGTGGTTAGTTAAAAAAAGGGTCCTGGGGGTCATTCAAACTATACAATATCCAGCAAGCTATTGTTTGTCTTTAAAAGATGtccaatagatgtctaaacaaagtcatcttggcttttagcttagcataaatcattgaatcggattagaccgttagcatccaTTATACAATGGCATTGATTATTCTGTCAAAATAAGAGTATAGTTACTAGCCATGTATCAggctagaaaatagcaacttttaattttcccaTTGATCTAACTACATGAAGAAGAGTCAAACTCTTCTTTACTATTTTTGTTTTGACCCAAGACCTGAACCTTAAAATAGTTAAAGAgtcaaaaatacaataattacatAGTCTGGAGTGTTAATGAACAGTTCTGTGTAACTTCTGCTTGCTGTTGTACatgtataaattataaaatgttcacttttagcttagcttagcataaatcattgaatcagattagaccgttagcatctatTTTACAATGGCATTGATTATAATGTCAAAATGAGAGTATTGTTACTAGCCATATATCAGgctagcaacttttcattttcccttTGATCTAACTACATGAAGAAGAGTCAaactctttcttttatttttgttttaacccAAGACCTGAACATTCAGAGGCAGCTTAACAAAATAATTAGGGTCAAATACAATAAGTGCATAGTCTGGAGCCTTTATGAACAGTTTTGTGTAACTTCTGCTAACTGTCATAcatgtataagtctaaaatgttcacttttagcttagcacaAATCATTGTATTGGATTGGACTATTAGCATTTATTATGTAATGGCATtggcggcgcagtaggtagtgctgttgcctcacagcaagaaggttgctggttcaagcctcgactgggtcagttggtgtttctgtgtggagtttgcatgttctccatgcgttcgtgtgggtttcctccggttgctctggtttcccccacagtccaaagatgtggtacaggtgaattgggtaggctaaattgtccagagtgaatgagtgtgtatggatgtttcccagagatgggttgcagctggaagggcatccgttgcgtgaaacatgctggataatttggcggttcattccgctgtggcgacccctgattattaaagggattaagtcgaaaagaaaatgaatataatgGCATtgataattatgtaaaaatgaaagtaTAGATCCTGCCATATCAGGCTAAAAAGTAGCAACTTTTTTACATTGATCTAACTACGTGAACaagagtcaaactttaaataggaaaatctcctttttttcattttacaagcgagatgctaatggtctaacatGATTCAATggcctatgctaagctaaaagtgcccctGCCAATCCCTAAGATTGCCTAAATGAATTCAAAAactggtaaaactcaacagtttaactctaggATAGTTGTAAAATTAGCTAATTTCCAAAATCGAAAGTGGCATGTTCCCAGTTTTGTTAAGAGATCATGAGCTAGCAttaaatatttgggtgaactaacccttcaacCCAGCAGTAAAGTGGATCTTGAAGGCTGGAGTTGAGAACCCGTGTCTCAGAGGATTTTGTTACATGTGGatggatgtgtgtttgtgtgtgcgccgTATGTTGAAAGACTGAGTTTGAGTGTGTGAATGTCAGCGTATGTCAGGCGCTCCCATAATTCCCAGAGGCTAATGAAAAGTCAGTCGGCGAACTGCCTTGAGCAAGATCGGTTGTTTGCTTGCCATATTCTGTGCTGACATGAACATCCGTGACCCCATTGATGACCATAATGTTGCTGGAGATATTAACCAAGGTCATCTATTTCAAACAAAACAACCAGGCTCTGTCATACGTCTGCTTATGGTGTAATTCAGAGTAAAAACGCCTGAAATTCatctgtttttacacatttatgtaCTCTTAATATTACTGTTTATgtgtttgaataataaaaaaaacaaacattaaaa

Function

symbol description
natd1 Orthologous to human NATD1 (N-acetyltransferase domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-19 Orthologous to human NATD1 (N-acetyltransferase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000038281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049726 True 3246 mRNA 0.41 3 15817644 15824100

Neighbor

gene id symbol gene type direction distance location
XLOC_025177 phospho1 coding upstream 6607 15805917 ~ 15811037 (+)
XLOC_025176 BX914211.1 coding upstream 22248 15755723 ~ 15795396 (+)
XLOC_025175 phb coding upstream 70645 15736811 ~ 15746999 (+)
XLOC_025174 NA coding upstream 97821 15685362 ~ 15719823 (+)
XLOC_025173 NA coding upstream 170977 15639452 ~ 15646667 (+)
XLOC_025179 tmem11 coding downstream 4326 15828426 ~ 15836140 (+)
XLOC_025180 NA coding downstream 41821 15865921 ~ 15866402 (+)
XLOC_025181 jpt2 coding downstream 68939 15893039 ~ 15902229 (+)
XLOC_025182 mapk8ip3 coding downstream 83197 15907297 ~ 15988728 (+)
XLOC_025183 CR387933.1 coding downstream 230909 16055009 ~ 16055732 (+)
XLOC_025429 BX649540.1 misc downstream 14424639 30248739 ~ 30249036 (+)
XLOC_025172 NA non-coding upstream 195890 15618278 ~ 15621754 (+)
XLOC_025170 NA non-coding upstream 299745 15517552 ~ 15517899 (+)
XLOC_025184 NA non-coding downstream 329124 16153224 ~ 16161459 (+)
XLOC_025185 NA non-coding downstream 362493 16186593 ~ 16241340 (+)
XLOC_025188 CR388224.1 non-coding downstream 548912 16373012 ~ 16373127 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000035_00246630_00247648 NATD1 coding CI01000035 null 246428 ~ 247703 (+)