XLOC_025177 (phospho1)


Basic Information

Item Value
gene id XLOC_025177
gene name phospho1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15805917 ~ 15811037 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049724
GTCAGACGCAGAGAACAGCCGTCGGCAGGGATGAACATCTGAACTGGACGCCCAACTTAAGGTTAACACTGCGCAGCTGCGAGATTAAGGTGAAAACAGGAGCAGCTGTAAACAAAGTCAAAACCTCCCACAAGTGCTGCTATTTTCCGCTGATCATAATGCGGGACTCAGTCTTCAACTGCTGTGTttctcctcctcatcctcctggAGCTGCAGCTGCAGAGCGCAGAAGCAGATCTCCAGCCCCGCAGAACCACAGCCGCTTCCTGATGTTCTTCGACTTTGACGAGACTCTAGTGGATGAGTGCAGTGATGACTCCATGGTGTCTGCAGCACCCGGCGGAGTCCTGCCCGGCTGGCTGAAGGACACGTACCGTCCCGGCCGCTACAATGAGTACATGCAGCGCGTCCTGGCCTACCTCTCTGAGCAGGGCGTCACTCCGGCGGCCATTCGGGCCACTGTGGAGAAGCTGCCCCCCTGTCCAGGCATCCCGGCTTTGATGCATTTCCTGCTCTCACAGCCATCCAGAGACTTTGAAGTGGTTTGTGTGTCTGACGCCAATACAGTCTTCATAGAGACGTGGCTGCAGTACATGGGCTTCCAGCCGCTGTTTCTGCGCATTTTCACCAACCCGGCTCACTTTGATGATAATGGGGTACTGCAGCTGCGCCCGTTTCACTCCCACGAGTGCCTGCGGTGCCCAGCTAACATGTGCAAAGCGGTGGTGGTCCGGCAGTACGTGGCGCAGCGCATACGGGAGAGAGGAGGACGGCCCTATCAGAAGGTTTTGTACATGGGAGACGGGGCCAACGACTTTTGCCCGTCTCTTACACTGTCACCGGGGGATGTAGCCTTCCCGAGGCGGGACTTCCCAATGCACAAACTGATCCAGGAGATGGGGGAGGCCAAACCTGGGGAGTTCAAGGCAAGCGTGGTGCCCTGGAAGAGTGGTGAGGACGTTGTTAACACCCTAAGGAAGATTTTGGAGAGGACCTGATTGGAGACGATTTACAAAGTGATTGGAATGTGCTCAAGAAGCATTTaggacaggggtgcccaaacgtttTTTATAAAGGGCCAATTTCCAAACTTTATTGAGGGCTGTGGGTCGAAGTTAAAGATACCAAACCGTATTACATTCAATTTGCCGTGGGTCGTTTCCTAAATTGTttgtgtattatttaaaaaaaaaaactagaaaacgATCCttcaaaactgattaattaatgatgcagtttaattttaaacgttttataatgaacttattatagtaaaaacataaacaatctcatttatagcacaatggagttcaatgcagaatacactagtcaagctgcctttgccttgatttgttcGCCGATGTCTTGTGCATCTGTCAACTGACAGTattcacattttaaaagtcttgaatcatttacaacatttcattttagttgtGCTTCGTGCCAGCACGCATtggttatttatgtttgtattatatgTCTTTCATATGTTCGGCTCGAACCTTGATTTTATTAATCGAGCCAGTTTTGGGTTTTGGGCCGTAACATATTTGGGGGCTCATCCGGGAAAATTAACGTCCCAACATTTATTCTATGGTTCTCATGGTTCTACGGATACTCAATTCTTTTTTGTGCCCAAAGAAATTTTGTGAGGTATACTAGAGGTAGTATTAGAGTTACTGATTTGTCTATTTGCTTCTGACTAGCTTGTGATTCGAAAATGGCATTGTCTAAAGTGGAAGCTTTTCTCAGTGATCCTTCACTTGAGCAGTTTGATAAATGCCGCAAGGACGATCTTTTCAAAATTGCAGAACATTTCCAAATTTGGGTCAGTCGCCAGTTtctgaaaaaaactatttataaagtACTTTTACGATCATTTGGTAGAAATAGGAGTATTTTAGACCACTAGTGAGAACCTCAATGAACCTGGCCATAACTATTCAGCTGAAAGGCTGTGCAGTCCTATAAGTACAGATGCAGGGCATAGTAGCAATGTAACTGATGTTGAAGCGAAGGTTGAGGCTAAAGTTGTGTTGCGACGTTTTTTGTAGCtcctcaattaaacaaagaaacaaaaggtaTCAATaaggta
>TCONS_00049725
ATGCGGGACTCAGTCTTCAACTGCTGTGTttctcctcctcatcctcctggAGCTGCAGCTGCAGAGCGCAGAAGCAGATCTCCAGCCCCGCAGAACCACAGCCGCTTCCTGATGTTCTTCGACTTTGACGAGACTCTAGTGGATGAGTGCAGTGATGACTCCATGGTGTCTGCAGCACCCGGCGGAGTCCTGCCCGGCTGGCTGAAGGACACGTACCGTCCCGGCCGCTACAATGAGTACATGCAGCGCGTCCTGGCCTACCTCTCTGAGCAGGGCGTCACTCCGGCGGCCATTCGGGCCACTGTGGAGAAGCTGCCCCCCTGTCCAGGCATCCCGGCTTTGATGCATTTCCTGCTCTCACAGCCATCCAGAGACTTTGAAGTGGTTTGTGTGTCTGACGCCAATACAGTCTTCATAGAGACGTGGCTGCAGTACATGGGCTTCCAGCCGCTGTTTCTGCGCATTTTCACCAACCCGGCTCACTTTGATGATAATGGGGTACTGCAGCTGCGCCCGTTTCACTCCCACGAGTGCCTGCGGTGCCCAGCTAACATGTGCAAAGCGGTGGTGGTCCGGCAGTACGTGGCGCAGCGCATACGGGAGAGAGGAGGACGGCCCTATCAGAAGGTTTTGTACATGGGAGACGGGGCCAACGACTTTTGCCCGTCTCTTACACTGTCACCGGGGGATGTAGCCTTCCCGAGGCGGGACTTCCCAATGCACAAACTGATCCAGGAGATGGGGGAGGCCAAACCTGGGGAGTTCAAGGCAAGCGTGGTGCCCTGGAAGAGTGGTGAGGACGTTGTTAACACCCTAAGGAAGATTTTGGAGAGGACCTGATTGGAG

Function

symbol description
phospho1 Predicted to enable phosphatase activity. Predicted to act upstream of or within regulation of bone mineralization. Is expressed in cleithrum and yolk syncytial layer. Orthologous to human PHOSPHO1 (phosphoethanolamine/phosphocholine phosphatase 1).

GO:

id name namespace
GO:0030500 regulation of bone mineralization biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-040801-198 Predicted to enable phosphatase activity. Predicted to act upstream of or within regulation of bone mineralization. Is expressed in cleithrum and yolk syncytial layer. Orthologous to human PHOSPHO1 (phosphoethanolamine/phosphocholine phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000008403

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049724 False 2098 mRNA 0.46 3 15805917 15811037
TCONS_00049725 True 846 mRNA 0.58 1 15809098 15809943

Neighbor

gene id symbol gene type direction distance location
XLOC_025176 BX914211.1 coding upstream 10521 15755723 ~ 15795396 (+)
XLOC_025175 phb coding upstream 58918 15736811 ~ 15746999 (+)
XLOC_025174 NA coding upstream 86094 15685362 ~ 15719823 (+)
XLOC_025173 NA coding upstream 159250 15639452 ~ 15646667 (+)
XLOC_025172 NA coding upstream 184163 15618278 ~ 15621754 (+)
XLOC_025178 natd1 coding downstream 6607 15817644 ~ 15824100 (+)
XLOC_025179 tmem11 coding downstream 17389 15828426 ~ 15836140 (+)
XLOC_025180 NA coding downstream 54884 15865921 ~ 15866402 (+)
XLOC_025181 jpt2 coding downstream 82002 15893039 ~ 15902229 (+)
XLOC_025182 mapk8ip3 coding downstream 96260 15907297 ~ 15988728 (+)
XLOC_025429 BX649540.1 misc downstream 14437702 30248739 ~ 30249036 (+)
XLOC_025170 NA non-coding upstream 288018 15517552 ~ 15517899 (+)
XLOC_025183 CR387933.1 non-coding downstream 243972 16055009 ~ 16055732 (+)
XLOC_025184 NA non-coding downstream 342187 16153224 ~ 16161459 (+)
XLOC_025185 NA non-coding downstream 375556 16186593 ~ 16241340 (+)
XLOC_025188 CR388224.1 non-coding downstream 561975 16373012 ~ 16373127 (+)

Expression


Co-expression Network