CI01000035_00204613_00209263 (PHB)


Basic Information

Item Value
gene id CI01000035_00204613_00209263
gene name PHB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000035
NCBI id null
chromosome length 418187
location 204613 ~ 209858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000035_00204613_00209263.mRNA
AGAAGTCTATGTTGAAGATTCTGCGCATGCTCAATCGCCACCTTTTCATGTGTTTTTTGCGCAGGCTCTGGTGGAGGACTGTCACATTGTTGCCATGGCGAAACTCTTTGAGTCCATTGGAAAGCTGGGATTGGCCTTGGCTATTGGAGGAGGTGTAGTCAACTCTGCTCTATATAATGTGGATGCGGGACACAGGGCCGTCATCTTCAACAGGTTTCAAGGTGTCCAGGATGATGTTGTTGGGGAGGGCACACACTTCCTTATACCCTGGGTGCAGAAGCCAATCATCTTTGACTGCAGGTCCCGTCCACGTAATGTGCCAGTCATCACTGGTAGCAAAGATTTGCAGAATGTGAACATCACGCTAAGAATCCTGTTCCGACCAGTTGCTGCACAGCTGCCACGGATTTTCATGAGTATTGGAGAAGACTATGACGAGAGAGTGCTGCCCTCCATCACCACTGAGGTTCTGAAGGCTGTAGTGGCCCGTTTTGATGCCGGTGAGCTCATCACTCAGAGAGAGCTGGTGTCCAGGCAGGTCAGTGAAGATCTGACCGAAAGAGCATCCACCTTCGGTCTCATTCTAGATGACGTCTCTCTGACACATCTGACGTTTGGCAAGGAGTTCACTGAGGCTGTTGAGATGAAGCAGGTTGCACAGCAGGAGGCTGAGAGGGCCAGGTTTGTTGTAGAAAAGGCAGAACAGCAGAAGCAGGCAGCCATTATATCAGCGGAAGGAGACTCCCAGGCTGCGCTATTGATCGCTGATTCTCTGGCAGTAGCTGGTGACGGCCTGGTGGAGCTGAGAAAGCTGGAAGCAGCCGAGGACATTGCCTTCCAGCTCAGTCGCTCTCGCAATGTTACCTACCTCCCGTCTGGACAGGGAACGCTCCTTCAGTTACCACAGTGACAGGGAAACTAGAGAGACACACACACTCACTTCACTTTTTTTTGTTCTAATTTTGGCTACTTTTGGAAAAGATGATGTCTGTAGAACCCATGCAACTATCTGATCAGCCTATAGGCAAATTTATAGAGGCAAAAACAAGTGTTTTTCTCTTTCTTTAGTCCAAGAGTTTTCTTGCTCTATTCCTGAAAGTATGGACTGCCGCAAGGTGGTTACAGTCATTGGAAAGAGTCAAGGGGAAGAGTCTGTGTGTATGCAAATGTGCTGCCGGTGCATATGTATTTGCATTTGAAATGTTTTCTCTGCTTAATGCGAGTTTAATTTGAAACCCATAAGCCTTTCGGTTAAATTCTCCATCAGCAGAATTTGATCTAAATACCATGCAAAGCTAAATTAAATTGTACATTCATGAGCAGTAAGACACACAGATTGCACTGTCAATGTGTGTCATGCTGCTTGGATGATTGACATTAATCTCTCTCTGCTCCTGCAGGACCGACTGTGTTGTTTTTTTGGTTTGAATATGTTTTGTTATTGTATGTATGTGGCAGAAGGAATGCCCTTGTATTCCACAAGTGGCAAATTGATAAAATAATCA

Function

symbol description
phb Predicted to be involved in mitochondrion organization. Predicted to be located in mitochondrial inner membrane and plasma membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in breast cancer and sporadic breast cancer. Orthologous to human PHB (prohibitin).

GO:

id name namespace
GO:0050847 progesterone receptor signaling pathway biological_process

KEGG:

id description
K17080 PHB1; prohibitin 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000035_00204613_00209263.mRNA True 1505 mRNA 0.46 7 204613 209858

Neighbor

gene id symbol gene type direction distance location
CI01000035_00110757_00131789 DOC2A coding upstream 72773 110757 ~ 131840 (+)
CI01000035_00087960_00088431 NUPR1 coding upstream 115750 87747 ~ 88889 (+)
CI01000035_00042693_00050440 NA coding upstream 153619 42693 ~ 51016 (+)
CI01000035_00026316_00035699 SH2B1 coding upstream 167092 26125 ~ 37521 (+)
CI01000035_00230246_00237031 ZFP652, ZNF652 coding downstream 20388 230246 ~ 237667 (+)
CI01000035_00243038_00243955 PHOSPHO1 coding downstream 33180 243038 ~ 244928 (+)
CI01000035_00246630_00247648 NATD1 coding downstream 36570 246428 ~ 247703 (+)
CI01000035_00250137_00252578 TMEM11 coding downstream 40191 250049 ~ 252834 (+)
CI01000035_00280231_00285897 NA coding downstream 70373 280231 ~ 286078 (+)
G172928 NA non-coding upstream 10676 192715 ~ 193937 (+)
G172960 NA non-coding upstream 15878 188467 ~ 188735 (+)
G172958 NA non-coding upstream 25707 178650 ~ 178906 (+)
G172957 NA non-coding upstream 26235 178060 ~ 178378 (+)
G172956 NA non-coding upstream 27264 177149 ~ 177349 (+)
G172943 NA non-coding downstream 47657 257515 ~ 258688 (+)
G172917 NA non-coding downstream 120624 330482 ~ 331770 (+)
G172979 NA non-coding downstream 145006 354864 ~ 355267 (+)
G172982 NA non-coding downstream 151683 361541 ~ 362379 (+)
G172983 NA non-coding downstream 155777 365635 ~ 365909 (+)
G172890 NA other upstream 131991 66406 ~ 72622 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025175 phb coding NC_007114.7 CM002887.2 15736811 ~ 15746999 (+)