G172917


Basic Information

Item Value
gene id G172917
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000035
NCBI id null
chromosome length 418187
location 330482 ~ 331770 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU196437
ACTCATACATAAACATTTGTACAATTAAAATAATCACACACACAGAACGTACCTCTGCTGTATAATCCACCTTGACTTTTGTTATTTTCCAGTAGCATGGCTCTGTATGCTCGTCCAGCCATGATTTGCGTGTGAAGAGTCGACCCACACCAAACATGCGCATGCCAGCTAGTAATGTAAAGAGGCGGGTTTCTCTCCGCACATCCTTCCAAGCCAACACTGGCAGCTTTTTGCCAGTAAAGGGCCGCGTCATGGTGTCGTAGTCTAAGGCATAGCGCTGAGAGTCCTGGGGCCGATTCTTCAGCTCCCGGTAGGCCCGGATCTTCCGTGCCATCTCGGCTATAAGCCTCAGACGCTTTTTCTTTACCATGTTGCCTGGATGATCTATCTGTTTGATTTGACCTCCACACAATTACGTCACAGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU196437 True 425 lncRNA 0.48 2 330482 331770

Neighbor

gene id symbol gene type direction distance location
CI01000035_00289404_00322769 MAPK8IP3 coding upstream 7131 288571 ~ 323351 (+)
CI01000035_00280231_00285897 NA coding upstream 44404 280231 ~ 286078 (+)
CI01000035_00250137_00252578 TMEM11 coding upstream 77648 250049 ~ 252834 (+)
CI01000035_00246630_00247648 NATD1 coding upstream 82779 246428 ~ 247703 (+)
CI01000035_00243038_00243955 PHOSPHO1 coding upstream 85554 243038 ~ 244928 (+)
G172943 NA non-coding upstream 71794 257515 ~ 258688 (+)
G172928 NA non-coding upstream 136545 192715 ~ 193937 (+)
G172960 NA non-coding upstream 141747 188467 ~ 188735 (+)
G172958 NA non-coding upstream 151576 178650 ~ 178906 (+)
G172957 NA non-coding upstream 152104 178060 ~ 178378 (+)
G172979 NA non-coding downstream 23094 354864 ~ 355267 (+)
G172982 NA non-coding downstream 29771 361541 ~ 362379 (+)
G172983 NA non-coding downstream 33865 365635 ~ 365909 (+)
CI01000035_00087960_00088431 NUPR1 other upstream 241593 87747 ~ 88889 (+)
G172890 NA other upstream 257860 66406 ~ 72622 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G28752 NA non-coding CI01000004 null 7742308 ~ 7742597 (+)
tiger barb (Puntius tetrazona) G21889 mrps34,LOC107567325,LOC107670906 non-coding NC_056701.1 CM032070.1 20328166 ~ 20329326 (-)