Gene
RNA
| Item | Value |
|---|---|
| gene id | G172983 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000035 |
| NCBI id | null |
| chromosome length | 418187 |
| location | 365635 ~ 365909 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU196504 | True | 275 | lncRNA | 0.44 | 1 | 365635 | 365909 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000035_00289404_00322769 | MAPK8IP3 | coding | upstream | 42284 | 288571 ~ 323351 (+) |
| CI01000035_00280231_00285897 | NA | coding | upstream | 79557 | 280231 ~ 286078 (+) |
| CI01000035_00250137_00252578 | TMEM11 | coding | upstream | 112801 | 250049 ~ 252834 (+) |
| CI01000035_00246630_00247648 | NATD1 | coding | upstream | 117932 | 246428 ~ 247703 (+) |
| CI01000035_00243038_00243955 | PHOSPHO1 | coding | upstream | 120707 | 243038 ~ 244928 (+) |
| G172982 | NA | non-coding | upstream | 3256 | 361541 ~ 362379 (+) |
| G172979 | NA | non-coding | upstream | 10368 | 354864 ~ 355267 (+) |
| G172917 | NA | non-coding | upstream | 33865 | 330482 ~ 331770 (+) |
| G172943 | NA | non-coding | upstream | 106947 | 257515 ~ 258688 (+) |
| G172928 | NA | non-coding | upstream | 171698 | 192715 ~ 193937 (+) |
| CI01000035_00087960_00088431 | NUPR1 | other | upstream | 276746 | 87747 ~ 88889 (+) |
| G172890 | NA | other | upstream | 293013 | 66406 ~ 72622 (+) |
