G338390 (pipnb,pitpnbl,LOC103031125,LOC108410611,LOC106600642,LOC105028335,LOC107567088,LOC107552474)


Basic Information

Item Value
gene id G338390
gene name pipnb,pitpnbl,LOC103031125,LOC108410611,LOC106600642,LOC105028335,LOC107567088,LOC107552474
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 196879 ~ 275971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU465632
TTTACCATCCAACAGagacttttatttattcttaaatcTTAGCAAATAAATAATGCCTTCATGACAGTATAGTAATGAtgattaataaacaatataaacagttGAATAATACTTCAATGCAACAGAGTCCCCCCACAGTTGGACTCTGGGTATGGCACAGTGGAGGAGACGAAAACGCACCGCATAATATTAACAACGAACCATGATTCAAttgaaaaataacattataaaaagcATTTCAATTTCGATACTGCATCACAGCAAGCAGctgattttttcttcttcttcttcacagtacatatatatatatatatatatatatatatttatatatatttttgtcaacatagTGCATATGCAACAACATCAACTCTGATAAACGATGACAGTAAGTATAATTGTTCATGAATCCTAAGCTGAAGCGGTAAAATATACAATCATTGCGTGCCCTAAGCGTGAAGACATTCCACccccttttttaaataatccgTAGTCATTCAACATTTAGCAGAAAGAGATTCTTAAGAAACAGCAAAGAACATTATGAAACGCTGGCTTTGTCAGTATTATTACATCGTCAATGTAGGAAAGACCATGAAACCTGTGAAACATGAAGTGACGTCACATTATGGGATGTCGTATTTTGGCACTGAATcagatttttatacataagCCTTGATATTCAATCAAAATATTTACATTCAAtatattctgtgtgtgtttgtgtgtgcatatgtgtatatgtatttgtgtatgtgtgtgtgtgtgtgtgtgcttgtataTAAAGAAACAACAATCAGAATAAGGACGttgtatctgtgtgtttgtatgtttgtgtgtgtgtgtgtgctcctgTCCACTGTAAAAATCAATCCTTTGTAGTCAAACTttgactctctctttctcctttctctctaaTTAATTCTtgcactctttttttctctctcattctgtcacTCCTTTAACCTTGTTGTAAGTCCCTAAGGCACCAAACCAAATGTTAGAAAGCATATCTGATCATGAGAAACCATAAGCTCATGAATAACACTTGCTTTTtgattctctcttttctcttcacacgcacacacacacacacacacacacacaaacacacacacacacacacacacacacacacatactctctctctctctttctctctctcacatacacacacatactctctcgcATATGATAATGGACACTTCCTGGGTAAGAGATGACAGTTCGGAAGGGCTTGGTGAAGCGGCACACTGTGATTGGCCATGTGAGGACTGAAGGAGGTAAAACAAAAAGTAGCCCCAGTTTTTCTTGTCATTCCTCAGTTGTTTCTGCTCTAGTCTTCTCCTGCTTTCATTCCTCGAACTGATCCTTCATTACGCATCTGATCCAGTTCCCGCTGCGTCTCCTCCTCCATCCTGCGGATGTCATCCATGGTGAGGTCCACCCAGCGGTCCAGCCAGCAGAACAGCTGACGGTGGAAATTAGTGAAGAGCCTCTTCTCTTGCTTGTGAATGAAGCTCTCCACACGCCCCTGAAGACCCCACCAACGGAAATGCACAGTCACCAACTTGTATGCAGTCATGTAGGGACAGTTACTGTTATGAAGCTCCTTCTATAGATGAGACagtataaaaaaggaaagaaggagTAAGAGTTGGAGAGCACCAGATAAAGAAAGAACCACAGTACACTACTTTCTGTAtgaaacatacatacatactaacTGGACTAAAGGGTGTACGCATTAGAT
>TU465635
ctctctctctctctttctctctctctctcacatacacacacatactctctcgcATATGATAATGGACACTTCCTGGGTAAGAGATGACAGTTCGGAAGGGCTTGGTGAAGCGGCACACTGTGATTGGCCATGTGAGGACTGAAGGAGGTAAAACAAAAAGTAGCCCCAGTTTTTCTTGTCATTCCTCAGTTGTTTCTGCTCTAGTCTTCTCCTGCTTTCATTCCTCGAACTGATCCTTCATTACGCATCTGATCCAGTTCCCGCTGCGTCTCCTCCTCCATCCTGCGGATGTCATCCATGGTGAGGTCCACCCAGCGGTCCAGCCAGCAGAACAGCTGACGGTGGAAATTAGTGAAGAGCCTCTTCTCTTGCTTGTGAATGAAGCTCTCCACACGCCCCTGAAGACCCCACCAACGGAAATGCACAGTCACCAACTTGTATGCAGTCATGTAGGGACAGTTACTGTTATGAAGCTCCTTCTATAGATGAGACagtataaaaaaggaaagaaggagTAAGAGTTGGAGAGCACCAGATAAAGAAAGAACCACAGTACACTACTTTCTGTAtgaaacatacatacatactaacTGGACTAAAGGGTGTACGCATTAGAT
>TU465636
tctgcacacacacacacatacactctctctctctttctctctctcacatacacacacatactctctcgcATATGATAATGGACACTTCCTGGGTAAGAGATGACAGTTCGGAAGGGCTTGGTGAAGCGGCACACTGTGATTGGCCATGTGAGGACTGAAGGAGGTAAAACAAAAAGTAGCCCCAGTTTTTCTTGTCATTCCTCAGTTGTTTCTGCTCTAGTCTTCTCCTGCTTTCATTCCTCGAACTGATCCTTCATTACGCATCTGATCCAGTTCCCGCTGCGTCTCCTCCTCCATCCTGCGGATGTCATCCATGGTGAGGTCCACCCAGCGGTCCAGCCAGCAGAACAGCTGACGGTGGAAATTAGTGAAGAGCCTCTTCTCTTGCTTGTGAATGAAGCTCTCCACACGCCCCTGAAGACCCCACCAACGGAAATGCACAGTCACCAACTTGTATGCAGTCATGTAGGGACAGTTACTGTTATGAAGCTCCTTCTTCCATCCTGGTCCCAGTGGTCCTCTGCCAGTTTTCTCAGAGTGAAAAAGGGCTGGATCCTCATCTGGCTTATAATCCACATCATCCACCTGAGAACGATCAGCAATATCGATTGGCACTACCTCAGTCTCCTCCCACTCCTCAGGGGGGAGTCCATGAGGATTATCAGTTGTTCCCAAGTCAGGTTTATGCCAAGTCTCAATCTTAATGAAAAAGTCATCTTTCATGTACTCATT
>TU465638
ctctctctctctctttctctctctctctcacatacacacacatactctctcgcATATGATAATGGACACTTCCTGGGTAAGAGATGACAGTTCGGAAGGGCTTGGTGAAGCGGCACACTGTGATTGGCCATGTGAGGACTGAAGGAGGTAAAACAAAAAGTAGCCCCAGTTTTTCTTGTCATTCCTCAGTTGTTTCTGCTCTAGTCTTCTCCTGCTTTCATTCCTCGAACTGATCCTTCATTACGCATCTG
>TU465639
tctgcacacacacacacatacactctctctctctttctctctctcacatacacacacatactctctcgcATATGATAATGGACACTTCCTGGGTAAGAGATGACAGTTCGGAAGGGCTTGGTGAAGCGGCACACTGTGATTGGCCATGTGAGGACTGAAGGAGGTAAAACAAAAAGTAGCCCCAGTTTTTCTTGTCATTCCTCAGTTGTTTCTGCTCTAGTCTTCTCCTGCTTTCATTCCTCGAACTGATCCTTCATTACGCATCTGATCCAGTTCCCGCTGCGTCTCCTCCTCCATCCTGCGGATGTCATCCATGGTGAGGTCCACCCAGCGGTCCAGCCAGCAGAACAGCTGACGGTGGAAATTAGTGAAGAGCCTCTTCTCTTGCTTGTGAATGAAGCTCTCCACACGCCCCTGAAGACCCCACCAACGGAAATGCACAGTCACCAACTTGTATGCAGTCATGTAGGGACAGTTACTGTTATGAAGCTCCTTCTTCCATCCTGGTCCCAGTGGTCCTCTGCCAGTTTTCTCAGAGTGAAAAAGGGCTGGATCCTCATCTGGCTTATAATCCACATCATCCACCTGAGAACGATCAGCAATATCGATTGGCACTACCTCAGTCTCCTCCCACTCCTCAGGGGGGAGTCCATGAGGCTGGATTGAggttaaag

Function

symbol description
pitpnbl Enables phosphatidylcholine transporter activity and phosphatidylinositol transfer activity. Predicted to act upstream of or within phospholipid transport. Located in endoplasmic reticulum and trans-Golgi network. Is expressed in eye.

NR:

description
phosphatidylinositol transfer protein beta isoform-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465632 True 1754 lncRNA 0.39 5 201731 274642
TU465635 False 617 lncRNA 0.47 4 222570 274642
TU465636 False 732 lncRNA 0.48 7 196879 275971
TU465638 False 251 lncRNA 0.46 2 222570 273685
TU465639 False 674 lncRNA 0.50 6 196879 275808

Neighbor

gene id symbol gene type direction distance location
LOC111192060 NA coding upstream 18963 166861 ~ 177916 (+)
sh2b1 sh2b1,LOC108410604,LOC107754626,LOC107660817,LOC107567095 coding downstream 10999 286970 ~ 300035 (+)
LOC103034296 nupr1,LOC103367043,LOC108413333 coding downstream 103899 379870 ~ 383939 (+)
LOC111192054 NA coding downstream 106262 382233 ~ 383939 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding downstream 137912 413883 ~ 483126 (+)
LOC103028631 NA coding downstream 556740 832711 ~ 858282 (+)
G338385 hirip3 non-coding upstream 8373 181083 ~ 188506 (+)
G338360 NA non-coding upstream 71648 123700 ~ 125231 (+)
G338361 NA non-coding upstream 103190 90849 ~ 93689 (+)
G338354 NA non-coding upstream 134119 62515 ~ 62760 (+)
G338409 pitpnbl,pipnb,LOC103031125,LOC108410611,LOC105890665,LOC106600642,LOC105028335,LOC107552474,LOC107739385,LOC107754658 non-coding downstream 3023 278994 ~ 282338 (+)
G338422 NA non-coding downstream 75429 351400 ~ 355190 (+)
G338424 NA non-coding downstream 81227 357198 ~ 359820 (+)
G338433 NA non-coding downstream 147305 423276 ~ 423503 (+)
G338439 LOC103034621 non-coding downstream 222135 498106 ~ 500413 (+)
LOC111192057 zwi other upstream 153363 36033 ~ 43516 (+)
atxn2l atxn2l other downstream 27046 303017 ~ 319697 (+)
G338430 nupr1,LOC103367043,LOC108413333 other downstream 103840 379811 ~ 384254 (+)
LOC107197228 NA other downstream 406808 682779 ~ 767606 (+)
LOC111192066 NA other downstream 736185 1012156 ~ 1017351 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 1602478 1878449 ~ 1955333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025164 NA non-coding NC_007114.7 CM002887.2 15229952 ~ 15231838 (+)
rainbow trout (Oncorhynchus mykiss) G2240781 NA non-coding NC_050570.1 CM025857.1 45635853 ~ 45637285 (+)