LOC111192054


Basic Information

Item Value
gene id LOC111192054
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 382233 ~ 383939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668486.1
AGCCAATCTAATTGGAattgaaataaaacacaaacaatattaAAGACAGCTAAATGATGTCATTTCCATATATTGAATGATAATTAAATAACGATTTTATTGAAAAGCCTAGTTAACTGGATAATAGGAAATAGTGCTGATTTCTGGTATAAAATGCatttgaaataattaaattataaaggCCCCAGGTCCCTACAAATATTTCTTTTAAAGCAAGAAATGGCTTTGAACATGAACTAAATGTGGCCATTAGCCACAAGTAGAAGGATTTAGCTCCTGAGACTTTGAGGAGCTGAGTAGCCTCAAGTGCACCACATGAGCATGTATTTCAAAGAAACTGTTTTGTTCGAGCCTTATGTTCTTTGCTGTGTTATCCCCCAATTGTTAAATACTTTGTTTGCAAAAATAATCCCCAAATGTACCATTTTTTATAAAGTAAGAACTGACTTTGGCTTATTAAAATTATTGTGTATATTGAAAGCCCCTCAGGACTGCACCTGGAAAGTGTGTTCTAAATGATGCAGTGAGCTGTTTTGTTTTGGTGCATGTGTGTGATTGAGCACGTGCTTTGCTGCTTGTGTCCTGCAGAGTGCACTAGCCGCAAAGGCAGAACGAAGAAGGAGGCAAGCAGCAACACAAACCGCCCCAACCCTGGAGGCCATGAGCGCAAGATTGTGGAAAAGCTTCAGAACACTGAGAAGAAAGCCAAAGAGTGAAACCTAGCAGAAAGAATCGGACGGCTTGATCTGGCAACCGACCTTGGGCGCCTTGGCAACGGATATCAAAGGGCAGAAGATACGAGGGACTTCCAAAAGTCCACTCGGCTGTGATGAGATGACTGCTGGCGTGGGAGACCGATGATTCAGTTTGCACTGGCCAGTGTTTGGTTCAGGGTTCACAAGGTTTTTGTGGGCACGTGCAGTCTGCTGGGCCATGCACCTGTTCTGGTGCCTGAGTGAACCCTGGAGAACTGGGTGTGCATGTGCTGTGGTGGTTAATGTGGTGCTTTTATGACCGTCTTTGTTATACATCTGTTTTACCTACTTTTGACTCTCCAATGGGCTTATagtccttttttttaacatattaaaatgcaAGTCTTATTTCTTACACCACCCCCCACAAAGTCCTGTTCATTTCATAATAAATTGGAATATAATGTACAAA

Function

GO:

id name namespace
GO:0009267 cellular response to starvation biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0071467 cellular response to pH biological_process
GO:0071470 cellular response to osmotic stress biological_process
GO:0071502 cellular response to temperature stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668486.1 True 1167 mRNA 0.41 2 382233 383939

Neighbor

gene id symbol gene type direction distance location
sh2b1 sh2b1,LOC108410604,LOC107754626,LOC107660817,LOC107567095 coding upstream 82198 286970 ~ 300035 (+)
LOC103028120 NA coding upstream 111405 268117 ~ 270828 (+)
LOC103035883 LOC108274992,LOC108410601,LOC107568513,LOC105028339,LOC107755172,LOC107552460,LOC108246804 coding upstream 124159 246090 ~ 258074 (+)
LOC103029426 asphd1,LOC107568490,LOC107755186,LOC107739384 coding upstream 143912 225713 ~ 238321 (+)
LOC111192060 NA coding upstream 204317 166861 ~ 177916 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding downstream 29944 413883 ~ 483126 (+)
LOC103028631 NA coding downstream 448772 832711 ~ 858282 (+)
LOC103028207 NA coding downstream 606499 990438 ~ 999281 (+)
LOC103038537 LOC108413147 coding downstream 781854 1165793 ~ 1182981 (+)
LOC103043644 LOC108412315 coding downstream 1196174 1580113 ~ 1589996 (+)
G338424 NA non-coding upstream 22413 357198 ~ 359820 (+)
G338422 NA non-coding upstream 27043 351400 ~ 355190 (+)
G338409 pitpnbl,pipnb,LOC103031125,LOC108410611,LOC105890665,LOC106600642,LOC105028335,LOC107552474,LOC107739385,LOC107754658 non-coding upstream 99895 278994 ~ 282338 (+)
G338390 pipnb,pitpnbl,LOC103031125,LOC108410611,LOC106600642,LOC105028335,LOC107567088,LOC107552474 non-coding upstream 106262 196879 ~ 275971 (+)
G338385 hirip3 non-coding upstream 193727 181083 ~ 188506 (+)
G338433 NA non-coding downstream 39337 423276 ~ 423503 (+)
G338439 LOC103034621 non-coding downstream 114167 498106 ~ 500413 (+)
G338452 NA non-coding downstream 136506 520445 ~ 522657 (+)
G338448 NA non-coding downstream 155586 539525 ~ 544294 (+)
G338464 mvp non-coding downstream 177163 561102 ~ 565342 (+)
atxn2l atxn2l other upstream 62536 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 338717 36033 ~ 43516 (+)
LOC107197228 NA other downstream 298840 682779 ~ 767606 (+)
LOC111192066 NA other downstream 628217 1012156 ~ 1017351 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 1494510 1878449 ~ 1955333 (+)

Expression


Co-expression Network