G338448


Basic Information

Item Value
gene id G338448
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 539525 ~ 544294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU465723
AAGATATGCAAGAACctgagaaagaaagggagagcaTGTAAGAGTAGTTGTGAGAGCAACTAATAAATCAGAAACTCTCTGAACTGCAGTGAGGAGAAGTTTATTCACAAGGCTGACTGATACATCATCAATAGTCAGATCAGGACTGAGAGAAGATCAATACAGAGAGCTCTATAAAAGGCTTTGTCTTACATACTGTGTAGATCACATACTGTTGGTTCAAAGCAATCCATTAAGGCATGCACAGGCAAGTCTGCACAGAGTCAGGATTATAGGAGCAACAGAGCTTTATATCACAACGCCACAAACGAAAAGATCAGAGAGGAAACGATAAAGAACACCAACCTCTGGCACTGGTGACTTCTCCGGCGGCGCGGGGACGAGGTGAGAATTAATGACAGGAAGAAAAGTCACCTTCACAGAACAGGAGAGGAACAGGAGGAAATGGCATAGAGTGCTTTCACAAGGTGCATAAAGATATAGAACATCATCGTGATGTAGAAATGCATCGATTAGGAGAATGTGGCGGAACTGGATGAAACCCAGAGATCAGAACTCTGCTGGTGTCACTGAAAAATCACATGGTTCCTCCTTCAGAACGTCACTGAGCAGCATGTGGATTCAGTAATAAAGAGTGTAAACATGCGAGGTCAAGGATCAAACCTCAGAAAAATACCAGCAAAAACAATGACAGCCAAACTAGTGACTGTGAGTTTCGAAAGCtatgttgtgtgtatatatatatatatttatatttatatttacacatatgGTTAGCTAGGAAGCATAATTCTAAAGTACATACATAaccataaaaatacatttaacgaTACTCAGAACGTTTCAGTCATAGAATCTGTGAAAGCACTGTAGTGGTAACAGTCAAGAATTTGCATTACTAATAGTCGCAATAAGTAATCAAAGATTAACGCAGTGTCAGAAGGTagcaatacaaatatatacatccacgtatgtacatatgtatatacatcAGGAGAGCTAGCAATGCAGGCAGAGTAAATATCTTCAGCCAGAGCGTATCAAGAGCAAAGAAACCAAGCCAGGTTCTGGCGATGCTGCTTAGAGTATGTTTTTTTGATTGACGCTAATTCAAAAAGAAGCATGCTACAGGTTCTTTATGTTTGCatgaagaaaatgaaagaatctTGACATCACTGAGAAGTTGCCTCTTTAAAAACAAAGGTGCTACGAAGGCTTTTATGAGCAAAACTGAAGAACCACAAGAATCATCTTTGtaaaacatatatgtatatatatgaataCATTAATAATTACATGGATCAATAACAAGAAGGTGTATTGATTAGattaaatgcagtaaatgcaCTGGCTTTTACAAATAGAGTAGATAATTATTAAGCACTTAGACAGCTGAGTAATTTAGAGCTGGACCcaatgattatatttttcaaTTAGTCAATCCATCTAATGACTTTAATCTAACTTCTCTTAAAATGCAAACCATGCACTTCAAGACATTATTCTGTACCAATAATACCTCAGTTGTAACACGTAACCTTGATTTTATGCCATAGCATGCCATTTTATCTACAAGTATAcgacaaaatataaaagtatagcTGTGGATGAACCTCCTTCTGCTAAACGTATGCTGCACTGGTGAGCTGGTGAGCAATTAGGAGTTCTAACTAACACAGGCGGTGACTGATAATAcgctcaaaaaaaataaataaataaataaaaactccaAAACTATTCTTGCACCTGTAAAACTGTTACGACCCAAATATTCATACCCAAGTATTAATAGTAGGGCTTGGTAAGTAATCAAAAATGGATTGAAACCAATATTCAGAACCTTTAACCAATGTAAAGGTAAAAATTTTGCCCATACATTTGTTTCTGTACTGTCCGATTACAAACATGTGGCTCCACCTCGTTAAGGTCTGCAACATGTAAGAAACATGCAGGAgaacttcagaaaaaaacaggccaacTGAGCAACTTGAGCAACTTATACCAGAAAAATGCTGGTATATAATTGATTGTAATCAATgtaaaatgttcaattaattATGGTATTGATTAAGTTCATATCCCCCAGTACTAGTTCATATTTCAGTTTTATAACTTCCATATTAAGCAGCTAAATGTCAAATTAGGAAGCAGCACCTTCCAGGAatccaaaagtggttcttctaagGGATCGCCCAAAGAACCTTCAGTAGCACCTTCATTTGTAAGAGTCTACGTCTACATTAGGTAATCCTTAAATTGGTCCTAGGTCAACACAAGAAGGCAGCCTCTACCTGTCAACATATAAGAGCTAATCATCGTCTCGAGAGTGTAAACTGACCAACACTCGCATTCAAAGCCAATCACAAGCTAAGCCCAGATGTTCTGCGTTGTTTTGCATGCTTAAACTTAGAAGCGTTTACTGTGGTGCAAAGCAGCACCTTCTAGTACAAATCCTCAAACACCCCTTTAATGCAGCTTTATAATACGAACATGCAGGTTTTTTAATGGCCAATGTACCCTGCATTACATTGACTAGACCCAGCATGAGGGTCGGGGTGCTTTACACTGCTGTAAACCTTGTCCTATCCTGTGGTTCCTTTTCAAACATCACATATTTACAAAGTGCTACAAAGTGAAGGGTTCACCTCCTGAAAGAAAACCCGAGAAGGAACGATTCCTCACCGAACCTTCGCTCATTACCTTTTGTCTCTTCAAAAGGCCATTGTGCTGTAAACATAAACCATTGTTGTCTGTACACTTTTGTTGAGCATGTTCTGAAGATTTTTGAATGTCGGGTTTTTATAGTGCTTCCCAACCCTGATCCAGAACTTCAGAAAGAgccttttaacctttttaagcTGCTTACGTAGGGACGACTTTCTAGtcaccaacttttttttttggtaaaaacattaacaaaagCCTTGGATGTGAGGTAAACTACGATTATGATTACTGATGCCTCACAAGCCCCCTGAAATACATCTATCAGGATTAATGTCTGGACCAGTCACATCTATATCCAGTAGTTGCAGAAACTAGCAACATCCAACCAGAACacaagagacagagtgaggagGTAGCCTAGAGCTGAGGAAAACAACATCAGCGAGTTTGCAGCTCTTTATCCATTTTCTTTGTCATATTCTTTACGTTTTCTACTGTCTTTTTGCTGCACATGAGcggacaaacaaaacaaacaaaaaacttgtTGTGTGTTCCTCCTGGAGAAAGAGCTTCTGATTCACAACTCTATGTTGCTGATTAGTAGCAAAGTGTGCAAACCACACCCACAAAAAATGATTGCTGAACTATTACTGTCGTAATATATTATGTGCTGTCTAGACTTACGTATATTCTGTACTATACCACTGTTAGTTCTGACTCTGAATGTAactggctgagaggtgttctgtgagtgccattatcagccggtaatgcactgtaaccaaagctctccatgtattactccaccgcATACAAGTaaactagcaacgatgcagcgcctACCAgtcaaacagcgcagctacaaacagagcagcaatggaactattttaatttgtggagtgtttataaccaaacagatcagtattttctcgtcctctttaactcaaaatctttcaataaacagcgataatggaactgtggtaaaaTCGcaataatattggcactgctgtgccaTTATTACACGTTATACGCTTAAATATCTTGACTTGCATAATACACTATATAGCAAGTATTGTGCAATTTGAGATTAAacccattttatttatttccttcctTGTATTTTGTGGATGTCTCTCCTTATTTGGTGCTATCGCCACATTTAGGGAACAAATGCTCTtgcaaacattttcgtctctgTTTGGGAGGCAAATGTTTTCAAAAACAGGAAAGGGAAGTTCTAGATCTTCTAGGATCAGGGTTGGGAACCACTAGCCTGTATAAATAGACTTATAATGATTTTCATTCCAGAATTTCCCACTTTAGACTTTCTGGTGACCCATTGAAAATCATGTTTTTGAGACTGGAATATTTTAGCTTCAACAGAACCGGTAAATGCTTACCAACTTTCACTTACATTATCTAATCTCACACACTGtctttcacacacaaacacactcatacGCGAACACCTTCTGAGCCAAAGGGAAAGAGAAGCTGTCCTTCAGAGGCCTGGCACAGATTCTGCTTGGGCAAAGGCATCCGAACAGAAATGATGAATTAGGTAACACTCAGGTTGAGTGAGATGAGTCGACCGAATGAACTGATTCAGCTGGGTTGATTCCTCATAGTGAAAGGGTCCTGATCTGGTGTATGTTGATTGTGCAGGAAAATACTGGCATCCAGCATTGTTGTAAACATCGAGAGAATAAcatgtaataaattaattgcatgtaaacaaacaaacaaacaaataacaaaacaaaaacaggaaaacagctGCTGAATTATTCATCATTACATCAAGATGACCTTTGCACTAGTggttgaaaaagagagagagagagagaaagagagagagaaagagagagagactattaCTACCACTACCATTCCACATGAGCATGTGCTACAGAGCCAGCCAATTCTTCTTCCCGTCCTTCTCTCTCCACACTACTGCATTCCTTACTTCTCTCCATCCCTAGAGCATCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465723 True 4658 lncRNA 0.38 3 539525 544294

Neighbor

gene id symbol gene type direction distance location
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 56399 413883 ~ 483126 (+)
LOC103034296 nupr1,LOC103367043,LOC108413333 coding upstream 155586 379870 ~ 383939 (+)
LOC111192054 NA coding upstream 155586 382233 ~ 383939 (+)
sh2b1 sh2b1,LOC108410604,LOC107754626,LOC107660817,LOC107567095 coding upstream 239490 286970 ~ 300035 (+)
LOC103028120 NA coding upstream 268697 268117 ~ 270828 (+)
LOC103028631 NA coding downstream 288417 832711 ~ 858282 (+)
LOC103028207 NA coding downstream 446144 990438 ~ 999281 (+)
LOC103038537 LOC108413147 coding downstream 621499 1165793 ~ 1182981 (+)
LOC103043644 LOC108412315 coding downstream 1035819 1580113 ~ 1589996 (+)
LOC103043029 atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653 coding downstream 1080467 1624761 ~ 1628818 (+)
G338452 NA non-coding upstream 16868 520445 ~ 522657 (+)
G338439 LOC103034621 non-coding upstream 39112 498106 ~ 500413 (+)
G338433 NA non-coding upstream 116022 423276 ~ 423503 (+)
G338424 NA non-coding upstream 179705 357198 ~ 359820 (+)
G338422 NA non-coding upstream 184335 351400 ~ 355190 (+)
G338464 mvp non-coding downstream 16808 561102 ~ 565342 (+)
G338470 dnal4,dnal4b,dnal4a,LOC108261343 non-coding downstream 66466 610760 ~ 620549 (+)
G338479 NA non-coding downstream 108227 652521 ~ 665666 (+)
G338463 NA non-coding downstream 121696 665990 ~ 778181 (+)
G338489 NA non-coding downstream 165280 709574 ~ 712540 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 155271 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 219828 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 496009 36033 ~ 43516 (+)
LOC107197228 NA other downstream 138485 682779 ~ 767606 (+)
LOC111192066 NA other downstream 467862 1012156 ~ 1017351 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 1334155 1878449 ~ 1955333 (+)

Expression


Co-expression Network