RNA id: TU465723


Basic Information

Item Value
RNA id TU465723
length 4658
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G338448
representative True

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 539525 ~ 544294 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGATATGCAAGAACctgagaaagaaagggagagcaTGTAAGAGTAGTTGTGAGAGCAACTAATAAATCAGAAACTCTCTGAACTGCAGTGAGGAGAAGTTTATTCACAAGGCTGACTGATACATCATCAATAGTCAGATCAGGACTGAGAGAAGATCAATACAGAGAGCTCTATAAAAGGCTTTGTCTTACATACTGTGTAGATCACATACTGTTGGTTCAAAGCAATCCATTAAGGCATGCACAGGCAAGTCTGCACAGAGTCAGGATTATAGGAGCAACAGAGCTTTATATCACAACGCCACAAACGAAAAGATCAGAGAGGAAACGATAAAGAACACCAACCTCTGGCACTGGTGACTTCTCCGGCGGCGCGGGGACGAGGTGAGAATTAATGACAGGAAGAAAAGTCACCTTCACAGAACAGGAGAGGAACAGGAGGAAATGGCATAGAGTGCTTTCACAAGGTGCATAAAGATATAGAACATCATCGTGATGTAGAAATGCATCGATTAGGAGAATGTGGCGGAACTGGATGAAACCCAGAGATCAGAACTCTGCTGGTGTCACTGAAAAATCACATGGTTCCTCCTTCAGAACGTCACTGAGCAGCATGTGGATTCAGTAATAAAGAGTGTAAACATGCGAGGTCAAGGATCAAACCTCAGAAAAATACCAGCAAAAACAATGACAGCCAAACTAGTGACTGTGAGTTTCGAAAGCtatgttgtgtgtatatatatatatatttatatttatatttacacatatgGTTAGCTAGGAAGCATAATTCTAAAGTACATACATAaccataaaaatacatttaacgaTACTCAGAACGTTTCAGTCATAGAATCTGTGAAAGCACTGTAGTGGTAACAGTCAAGAATTTGCATTACTAATAGTCGCAATAAGTAATCAAAGATTAACGCAGTGTCAGAAGGTagcaatacaaatatatacatccacgtatgtacatatgtatatacatcAGGAGAGCTAGCAATGCAGGCAGAGTAAATATCTTCAGCCAGAGCGTATCAAGAGCAAAGAAACCAAGCCAGGTTCTGGCGATGCTGCTTAGAGTATGTTTTTTTGATTGACGCTAATTCAAAAAGAAGCATGCTACAGGTTCTTTATGTTTGCatgaagaaaatgaaagaatctTGACATCACTGAGAAGTTGCCTCTTTAAAAACAAAGGTGCTACGAAGGCTTTTATGAGCAAAACTGAAGAACCACAAGAATCATCTTTGtaaaacatatatgtatatatatgaataCATTAATAATTACATGGATCAATAACAAGAAGGTGTATTGATTAGattaaatgcagtaaatgcaCTGGCTTTTACAAATAGAGTAGATAATTATTAAGCACTTAGACAGCTGAGTAATTTAGAGCTGGACCcaatgattatatttttcaaTTAGTCAATCCATCTAATGACTTTAATCTAACTTCTCTTAAAATGCAAACCATGCACTTCAAGACATTATTCTGTACCAATAATACCTCAGTTGTAACACGTAACCTTGATTTTATGCCATAGCATGCCATTTTATCTACAAGTATAcgacaaaatataaaagtatagcTGTGGATGAACCTCCTTCTGCTAAACGTATGCTGCACTGGTGAGCTGGTGAGCAATTAGGAGTTCTAACTAACACAGGCGGTGACTGATAATAcgctcaaaaaaaataaataaataaataaaaactccaAAACTATTCTTGCACCTGTAAAACTGTTACGACCCAAATATTCATACCCAAGTATTAATAGTAGGGCTTGGTAAGTAATCAAAAATGGATTGAAACCAATATTCAGAACCTTTAACCAATGTAAAGGTAAAAATTTTGCCCATACATTTGTTTCTGTACTGTCCGATTACAAACATGTGGCTCCACCTCGTTAAGGTCTGCAACATGTAAGAAACATGCAGGAgaacttcagaaaaaaacaggccaacTGAGCAACTTGAGCAACTTATACCAGAAAAATGCTGGTATATAATTGATTGTAATCAATgtaaaatgttcaattaattATGGTATTGATTAAGTTCATATCCCCCAGTACTAGTTCATATTTCAGTTTTATAACTTCCATATTAAGCAGCTAAATGTCAAATTAGGAAGCAGCACCTTCCAGGAatccaaaagtggttcttctaagGGATCGCCCAAAGAACCTTCAGTAGCACCTTCATTTGTAAGAGTCTACGTCTACATTAGGTAATCCTTAAATTGGTCCTAGGTCAACACAAGAAGGCAGCCTCTACCTGTCAACATATAAGAGCTAATCATCGTCTCGAGAGTGTAAACTGACCAACACTCGCATTCAAAGCCAATCACAAGCTAAGCCCAGATGTTCTGCGTTGTTTTGCATGCTTAAACTTAGAAGCGTTTACTGTGGTGCAAAGCAGCACCTTCTAGTACAAATCCTCAAACACCCCTTTAATGCAGCTTTATAATACGAACATGCAGGTTTTTTAATGGCCAATGTACCCTGCATTACATTGACTAGACCCAGCATGAGGGTCGGGGTGCTTTACACTGCTGTAAACCTTGTCCTATCCTGTGGTTCCTTTTCAAACATCACATATTTACAAAGTGCTACAAAGTGAAGGGTTCACCTCCTGAAAGAAAACCCGAGAAGGAACGATTCCTCACCGAACCTTCGCTCATTACCTTTTGTCTCTTCAAAAGGCCATTGTGCTGTAAACATAAACCATTGTTGTCTGTACACTTTTGTTGAGCATGTTCTGAAGATTTTTGAATGTCGGGTTTTTATAGTGCTTCCCAACCCTGATCCAGAACTTCAGAAAGAgccttttaacctttttaagcTGCTTACGTAGGGACGACTTTCTAGtcaccaacttttttttttggtaaaaacattaacaaaagCCTTGGATGTGAGGTAAACTACGATTATGATTACTGATGCCTCACAAGCCCCCTGAAATACATCTATCAGGATTAATGTCTGGACCAGTCACATCTATATCCAGTAGTTGCAGAAACTAGCAACATCCAACCAGAACacaagagacagagtgaggagGTAGCCTAGAGCTGAGGAAAACAACATCAGCGAGTTTGCAGCTCTTTATCCATTTTCTTTGTCATATTCTTTACGTTTTCTACTGTCTTTTTGCTGCACATGAGcggacaaacaaaacaaacaaaaaacttgtTGTGTGTTCCTCCTGGAGAAAGAGCTTCTGATTCACAACTCTATGTTGCTGATTAGTAGCAAAGTGTGCAAACCACACCCACAAAAAATGATTGCTGAACTATTACTGTCGTAATATATTATGTGCTGTCTAGACTTACGTATATTCTGTACTATACCACTGTTAGTTCTGACTCTGAATGTAactggctgagaggtgttctgtgagtgccattatcagccggtaatgcactgtaaccaaagctctccatgtattactccaccgcATACAAGTaaactagcaacgatgcagcgcctACCAgtcaaacagcgcagctacaaacagagcagcaatggaactattttaatttgtggagtgtttataaccaaacagatcagtattttctcgtcctctttaactcaaaatctttcaataaacagcgataatggaactgtggtaaaaTCGcaataatattggcactgctgtgccaTTATTACACGTTATACGCTTAAATATCTTGACTTGCATAATACACTATATAGCAAGTATTGTGCAATTTGAGATTAAacccattttatttatttccttcctTGTATTTTGTGGATGTCTCTCCTTATTTGGTGCTATCGCCACATTTAGGGAACAAATGCTCTtgcaaacattttcgtctctgTTTGGGAGGCAAATGTTTTCAAAAACAGGAAAGGGAAGTTCTAGATCTTCTAGGATCAGGGTTGGGAACCACTAGCCTGTATAAATAGACTTATAATGATTTTCATTCCAGAATTTCCCACTTTAGACTTTCTGGTGACCCATTGAAAATCATGTTTTTGAGACTGGAATATTTTAGCTTCAACAGAACCGGTAAATGCTTACCAACTTTCACTTACATTATCTAATCTCACACACTGtctttcacacacaaacacactcatacGCGAACACCTTCTGAGCCAAAGGGAAAGAGAAGCTGTCCTTCAGAGGCCTGGCACAGATTCTGCTTGGGCAAAGGCATCCGAACAGAAATGATGAATTAGGTAACACTCAGGTTGAGTGAGATGAGTCGACCGAATGAACTGATTCAGCTGGGTTGATTCCTCATAGTGAAAGGGTCCTGATCTGGTGTATGTTGATTGTGCAGGAAAATACTGGCATCCAGCATTGTTGTAAACATCGAGAGAATAAcatgtaataaattaattgcatgtaaacaaacaaacaaacaaataacaaaacaaaaacaggaaaacagctGCTGAATTATTCATCATTACATCAAGATGACCTTTGCACTAGTggttgaaaaagagagagagagagagaaagagagagagaaagagagagagactattaCTACCACTACCATTCCACATGAGCATGTGCTACAGAGCCAGCCAATTCTTCTTCCCGTCCTTCTCTCTCCACACTACTGCATTCCTTACTTCTCTCCATCCCTAGAGCATCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465727 lncRNA upstream 16868 520445 ~ 522657 (+) True G338452
TU465707 lncRNA upstream 39112 498106 ~ 500413 (+) True G338439
TU465699 lncRNA upstream 116022 423276 ~ 423503 (+) True G338433
TU465686 lncRNA upstream 179705 357198 ~ 359820 (+) True G338424
TU465683 lncRNA upstream 184335 351400 ~ 355190 (+) True G338422
TU465750 lncRNA downstream 16808 561102 ~ 563416 (+) False G338464
TU465751 lncRNA downstream 16808 561102 ~ 565342 (+) True G338464
TU465764 lncRNA downstream 66466 610760 ~ 620549 (+) False G338470
TU465766 lncRNA downstream 66466 610760 ~ 620549 (+) True G338470
TU465777 lncRNA downstream 108227 652521 ~ 665666 (+) True G338479
XM_022668488.1 mRNA upstream 56399 413883 ~ 483126 (+) True LOC103036801
XM_007234708.3 mRNA upstream 155586 379870 ~ 383939 (+) True LOC103034296
XM_022668486.1 mRNA upstream 155586 382233 ~ 383939 (+) True LOC111192054
XM_022668465.1 mRNA upstream 219828 303017 ~ 319697 (+) True atxn2l
XM_022668522.1 mRNA upstream 239490 286970 ~ 300035 (+) True sh2b1
XM_022668467.1 mRNA downstream 138485 682779 ~ 699701 (+) False LOC107197228
XM_022668492.1 mRNA downstream 288417 832711 ~ 858282 (+) False LOC103028631
XM_022668493.1 mRNA downstream 291815 836109 ~ 858282 (+) True LOC103028631
XM_022668521.1 mRNA downstream 446144 990438 ~ 999281 (+) True LOC103028207
XM_022668474.1 mRNA downstream 621499 1165793 ~ 1182981 (+) True LOC103038537
TU465696 other upstream 155271 379881 ~ 384254 (+) True G338430
TU465695 other upstream 155540 379811 ~ 383985 (+) False G338430
TU465693 other upstream 155540 379881 ~ 383985 (+) False G338430
TU465694 other upstream 155540 379881 ~ 383985 (+) False G338430
TU465669 other upstream 233284 303086 ~ 306241 (+) False atxn2l
TU466019 other downstream 467877 1012171 ~ 1015938 (+) False LOC111192066
TU466020 other downstream 467877 1012171 ~ 1015938 (+) False LOC111192066
TU466304 other downstream 1406682 1950976 ~ 1954313 (+) True G338841

Expression Profile