RNA id: TU465683


Basic Information

Item Value
RNA id TU465683
length 479
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G338422
representative True

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 351400 ~ 355190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAATCGGTCCATATAGTTGAGCAGGTTGATGTAGCAGAGCACTCCCACAGTCAGAAACGCTCTGGTTTTGGACAGTCCGCTCGGAGaatcctcctcctgctgctgctgctgaggagAAGGCCCTTCATCTTTGTCGGAGGACCCTTCACCCTCGGCATCATCTGAGAAGAACGGTGTGGTATCAGAGGTGGGATCTGCGAGTGACATCACTGTGAGTGTTGTTTACCTGGAGTTACGGGCTGAAGGCAGCAGTCTCAGTGCAGATGGATGAAGATTGTCTCCTGTTCTTATTAAACGCTACACTGAAGTCACTCCGTTCACCAAAAAAACCGAAACGTTACCTAAACCGACCTGCGAACATCTTAAAAACTAAACCGTTGACCCTAAACCCCCGGCGGCGGCTCTTCAATCCGCCCGCTTCCCAGTTTCTCCGCTCAGCTGTTGTTGTGAAGTCTCACTACGGCGCCGCCATGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465660 lncRNA upstream 69062 279546 ~ 282338 (+) True G338409
TU465659 lncRNA upstream 70819 278994 ~ 280581 (+) False G338409
TU465636 lncRNA upstream 75429 196879 ~ 275971 (+) False G338390
TU465639 lncRNA upstream 75592 196879 ~ 275808 (+) False G338390
TU465632 lncRNA upstream 76758 201731 ~ 274642 (+) True G338390
TU465686 lncRNA downstream 2008 357198 ~ 359820 (+) True G338424
TU465699 lncRNA downstream 68086 423276 ~ 423503 (+) True G338433
TU465707 lncRNA downstream 142916 498106 ~ 500413 (+) True G338439
TU465727 lncRNA downstream 165255 520445 ~ 522657 (+) True G338452
TU465723 lncRNA downstream 184335 539525 ~ 544294 (+) True G338448
XM_022668465.1 mRNA upstream 31703 303017 ~ 319697 (+) True atxn2l
XM_022668522.1 mRNA upstream 51365 286970 ~ 300035 (+) True sh2b1
XM_022668517.1 mRNA upstream 80572 268117 ~ 270828 (+) True LOC103028120
XM_022668498.1 mRNA upstream 93326 246090 ~ 258074 (+) True LOC103035883
XM_022668507.1 mRNA upstream 113079 225713 ~ 238321 (+) False LOC103029426
XM_007234708.3 mRNA downstream 24680 379870 ~ 383939 (+) True LOC103034296
XM_022668486.1 mRNA downstream 27043 382233 ~ 383939 (+) True LOC111192054
XM_022668488.1 mRNA downstream 58693 413883 ~ 483126 (+) True LOC103036801
XM_022668467.1 mRNA downstream 327589 682779 ~ 699701 (+) False LOC107197228
XM_022668492.1 mRNA downstream 477521 832711 ~ 858282 (+) False LOC103028631
TU465669 other upstream 45159 303086 ~ 306241 (+) False atxn2l
TU465566 other upstream 307884 36033 ~ 43516 (+) False LOC111192057
TU465695 other downstream 24621 379811 ~ 383985 (+) False G338430
TU465693 other downstream 24691 379881 ~ 383985 (+) False G338430
TU465694 other downstream 24691 379881 ~ 383985 (+) False G338430
TU465696 other downstream 24691 379881 ~ 384254 (+) True G338430
TU466019 other downstream 656981 1012171 ~ 1015938 (+) False LOC111192066

Expression Profile