LOC103028631


Basic Information

Item Value
gene id LOC103028631
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 832711 ~ 858282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022668492.1
aacacacacgcgcacacactcacacataggAGGAAGTGTCTACAATCGCTACATCTCTGAGTCAGACACACTGACTGGACTCAGACCAGTGTAGACACTGTGAGAATACCAGGGAAAAACATGGAATAAAGGAATGCCAACAGGGGATTAAagttaaagaaaatgaaagGTTCCCATGGAGTTGCTAAACTCTTGAAAATACTTCCTTCCTGAAAACCTGCTAGCATCCCACTCCAGCCAGGATGATGCCTGTGAGGATGCTGTTAGTGTCAGTGCTTCCTCTGCTGGTGCAGAGCTCAGAGATCCAGCAGGGCTCTTTTCTCAGTACAACCCAAGATATGCCTCCTGCGTTGGACTCCGTGGAGTGCTACAATGACTACACAAGCCACATACGCTGCACTTGGGAGGAGTACCCACATGGAAATTCAAATTTGGTGGTAGAAGGAAGCAAATGGGAGGATATTAAGGAATGTGGACCAGATGGTCCAGCTGTGCGGTTGTCCAATGGGAAGCTCCACCGTAGCTGTGTCTACAAAACCCGCATATTTTCCTTAAACAGTCGAACTTTCTACTTGAACACAACCTGTGCACCCAAGACGACAACTCTTAATATAGCTCAGCATGGAAAAGTCTTAAGCCCAGTAAATCTAACTGTAAAAGAAGTCAAAGGCGAAGGGAGGATATTGAGTTGGAACAGCGCCTACTCTGCTTCATcaaatctctcacacacactcacctacCAACTCAAATATAAGAGACATGGACATGACTGGACTGTGCTGGATAATATAACTGCCACACAGATGCTGATAAAGGAACAGGAGCTGGTGGCTGCATACTCGTATGAGGCCAGAGTTCGGGCTCGGGGTCCAGTAGGCCTGTGGAGCGACTGGAGCACCCCTGTGTCATGGGTCACTGAAGAAGAAGGAGTTTTTAACctgcagtgtgtaatagaggAAAGGGGCGTGTCCTGTAGCTGGCGGGTAAAGAGGGAGCATGCCCAGTTCCTGTCGTATCACCTGTGCGGACAAACCAGTGAATCCAATCAGTTTTGTCAGCACTGTGTCAGCCACACCAAACGGCCAGACCATGCTGTGCTGGATTATACTTGTTCAGTCGACAGTCCTGAACCAGAGCGTCTGACCGTGGAACTGAAAACCGTCCGCAGAACCAAGAATATTCCAGACTTCCTCAACGTTAAGCCCCCGCAAACAGACGCAGCCAATTTtaaagtgaaaaagaaagatGGCTTATGGAGCGTGACCTGGTCCAAACCCAAAGTCCACGAAACTCTCGACCTCTGCTATGAACTGCGCCTGCGGGATAATGGAACACAGGCtgaaacatatttcaattttacTCAAGCTGATTTCAGTGCAGAATTCACCCCGTCCTCCCTGAGACCTGATACTACATTCATGGTTCAGGTCAGATCACTGCCGTGCGAGATCTTTGAAGGGCAACCTTCAGACTGGTCAGATCCTGTGTTCTTCAAAAACGATCCAGctTCCCGTATCTTCACCATCATTTACTGCTTGATCGGCGTTGTTATAGCTGTGGTTTTCTTAATCCTGTATAACGCTTTTCCAGCCTGCCACAGGAGGGTAGAGCGGTGGGAGGTGTCTATTCCCTCTCCTTTTAAAAGTCGAGTCCTGGAGGAAATGAGCAGTAGGAGGTCTCCTGCTGGCTGGGGTTATGTCTGCAGTGAGAATGAGAAAACCTCTGTGTGCATCATGCAGCCTTCAGACAACCCCACCATTTACAAGGGCAGCATCTCTGAGTGCCCTCTTTTGCCATACATGGAAGACAGCCTGATCAAAACAGGTTGGATGTCCACTCCGGACCACTCGGCCCCCTACACCGAGGGCAGCGGAATGTCAGTCAGCTCTGTGCTGAGCTTCTCTGGGCCTTACATTTTCTGCCGCCAAGATTCTTCTCAAACCGAAATTCTGGAAGCGTCATCCTTCTACTCGGACTCGACTGACTGCACGTCTATTGATGAGAATCCCAAAGACTCTCCTCCTGTAAATGGGGGATATGTTTCATCCCCTCCCACTGCAATGCCTTCTGCAGGAGACTCCGCCCCACCGGATTACCCGGCGAATGAGAGCACGAACCCCGGCCTATCACAGCTCCCAGAACACGATCCCCCGGCATACACCCCTAACCCTACCGCAGTGCCCGGGGCAATCTTCACTCACCCCTCAGGATACTGTATGATGCCCAATATTGAAGCAGATGTTGCTGCGCGGGTGCAAACATCTGCCCCACCACCAGGGGGCGATACAAAGAGTCAATCAAATGATGCAGGAGAGGATGATCAACGTGCACGTGGATATGTGACGCTTTCTGAGCCTAAAACCTGAGAGCGTTTTGTTATGCAGCCCTAATCGAGTCACACAAACAACATGCATTTAGATGGAgatgaaacaaacaaagcttTTCTTCACAAACAAAGACACTCATTACCGTAAGACAAAGGAAGCAGAAGTTTCAGCATTATTTTGGCTTTCAGACTTCCTGATGTAGCCATCATTAACTTGTGGCACtcgggggcgccgagtggtccagcggactaaagcgctgccactatgagcgggaggtcgcaagtttgaacccccgc
>XM_022668493.1
GTGTAAATTCATCCACAAAGCCGTTCTCtcgtctttctctctgtttctgtacttcctctctcgctctcgtaCTTTTACATCGTTTTTCCGTCCTGCCTCCCCTGCAGCCTCAGACTGAGGGAAACCCCTTTCCCCTCCCATTCCAGGCACTCACAccagaatcacacacacacacactgacgtcACCCAACACTATGGCTGGTTTTGGTAGAAGACACTGAGGCtgaggtagagaggtagagagcaTGGTGCTAACTAACCTGCAGTGGAAGGGGGTAGGATGATACTGAGGTTCCCATGGAGTTGCTAAACTCTTGAAAATACTTCCTTCCTGAAAACCTGCTAGCATCCCACTCCAGCCAGGATGATGCCTGTGAGGATGCTGTTAGTGTCAGTGCTTCCTCTGCTGGTGCAGAGCTCAGAGATCCAGCAGGGCTCTTTTCTCAGTACAACCCAAGATATGCCTCCTGCGTTGGACTCCGTGGAGTGCTACAATGACTACACAAGCCACATACGCTGCACTTGGGAGGAGTACCCACATGGAAATTCAAATTTGGTGGTAGAAGGAAGCAAATGGGAGGATATTAAGGAATGTGGACCAGATGGTCCAGCTGTGCGGTTGTCCAATGGGAAGCTCCACCGTAGCTGTGTCTACAAAACCCGCATATTTTCCTTAAACAGTCGAACTTTCTACTTGAACACAACCTGTGCACCCAAGACGACAACTCTTAATATAGCTCAGCATGGAAAAGTCTTAAGCCCAGTAAATCTAACTGTAAAAGAAGTCAAAGGCGAAGGGAGGATATTGAGTTGGAACAGCGCCTACTCTGCTTCATcaaatctctcacacacactcacctacCAACTCAAATATAAGAGACATGGACATGACTGGACTGTGCTGGATAATATAACTGCCACACAGATGCTGATAAAGGAACAGGAGCTGGTGGCTGCATACTCGTATGAGGCCAGAGTTCGGGCTCGGGGTCCAGTAGGCCTGTGGAGCGACTGGAGCACCCCTGTGTCATGGGTCACTGAAGAAGAAGGAGTTTTTAACctgcagtgtgtaatagaggAAAGGGGCGTGTCCTGTAGCTGGCGGGTAAAGAGGGAGCATGCCCAGTTCCTGTCGTATCACCTGTGCGGACAAACCAGTGAATCCAATCAGTTTTGTCAGCACTGTGTCAGCCACACCAAACGGCCAGACCATGCTGTGCTGGATTATACTTGTTCAGTCGACAGTCCTGAACCAGAGCGTCTGACCGTGGAACTGAAAACCGTCCGCAGAACCAAGAATATTCCAGACTTCCTCAACGTTAAGCCCCCGCAAACAGACGCAGCCAATTTtaaagtgaaaaagaaagatGGCTTATGGAGCGTGACCTGGTCCAAACCCAAAGTCCACGAAACTCTCGACCTCTGCTATGAACTGCGCCTGCGGGATAATGGAACACAGGCtgaaacatatttcaattttacTCAAGCTGATTTCAGTGCAGAATTCACCCCGTCCTCCCTGAGACCTGATACTACATTCATGGTTCAGGTCAGATCACTGCCGTGCGAGATCTTTGAAGGGCAACCTTCAGACTGGTCAGATCCTGTGTTCTTCAAAAACGATCCAGctTCCCGTATCTTCACCATCATTTACTGCTTGATCGGCGTTGTTATAGCTGTGGTTTTCTTAATCCTGTATAACGCTTTTCCAGCCTGCCACAGGAGGGTAGAGCGGTGGGAGGTGTCTATTCCCTCTCCTTTTAAAAGTCGAGTCCTGGAGGAAATGAGCAGTAGGAGGTCTCCTGCTGGCTGGGGTTATGTCTGCAGTGAGAATGAGAAAACCTCTGTGTGCATCATGCAGCCTTCAGACAACCCCACCATTTACAAGGGCAGCATCTCTGAGTGCCCTCTTTTGCCATACATGGAAGACAGCCTGATCAAAACAGGTTGGATGTCCACTCCGGACCACTCGGCCCCCTACACCGAGGGCAGCGGAATGTCAGTCAGCTCTGTGCTGAGCTTCTCTGGGCCTTACATTTTCTGCCGCCAAGATTCTTCTCAAACCGAAATTCTGGAAGCGTCATCCTTCTACTCGGACTCGACTGACTGCACGTCTATTGATGAGAATCCCAAAGACTCTCCTCCTGTAAATGGGGGATATGTTTCATCCCCTCCCACTGCAATGCCTTCTGCAGGAGACTCCGCCCCACCGGATTACCCGGCGAATGAGAGCACGAACCCCGGCCTATCACAGCTCCCAGAACACGATCCCCCGGCATACACCCCTAACCCTACCGCAGTGCCCGGGGCAATCTTCACTCACCCCTCAGGATACTGTATGATGCCCAATATTGAAGCAGATGTTGCTGCGCGGGTGCAAACATCTGCCCCACCACCAGGGGGCGATACAAAGAGTCAATCAAATGATGCAGGAGAGGATGATCAACGTGCACGTGGATATGTGACGCTTTCTGAGCCTAAAACCTGAGAGCGTTTTGTTATGCAGCCCTAATCGAGTCACACAAACAACATGCATTTAGATGGAgatgaaacaaacaaagcttTTCTTCACAAACAAAGACACTCATTACCGTAAGACAAAGGAAGCAGAAGTTTCAGCATTATTTTGGCTTTCAGACTTCCTGATGTAGCCATCATTAACTTGTGGCACtcgggggcgccgagtggtccagcggactaaagcgctgccactatgagcgggaggtcgcaagtttgaacccccgc

Function

GO: NA

KEGG:

id description
K04738 CSF2RB, IL3RB, CD131; cytokine receptor common subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022668492.1 False 2623 mRNA 0.49 14 832711 858282
XM_022668493.1 True 2745 mRNA 0.50 14 836109 858282

Neighbor

gene id symbol gene type direction distance location
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 349585 413883 ~ 483126 (+)
LOC103034296 nupr1,LOC103367043,LOC108413333 coding upstream 448772 379870 ~ 383939 (+)
LOC111192054 NA coding upstream 448772 382233 ~ 383939 (+)
sh2b1 sh2b1,LOC108410604,LOC107754626,LOC107660817,LOC107567095 coding upstream 532676 286970 ~ 300035 (+)
LOC103028120 NA coding upstream 561883 268117 ~ 270828 (+)
LOC103028207 NA coding downstream 132156 990438 ~ 999281 (+)
LOC103038537 LOC108413147 coding downstream 307511 1165793 ~ 1182981 (+)
LOC103043644 LOC108412315 coding downstream 721831 1580113 ~ 1589996 (+)
LOC103043029 atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653 coding downstream 766479 1624761 ~ 1628818 (+)
ube2z ube2z,LOC107740626 coding downstream 776605 1634887 ~ 1646466 (+)
G338463 NA non-coding upstream 54530 665990 ~ 778181 (+)
G338489 NA non-coding upstream 120171 709574 ~ 712540 (+)
G338490 NA non-coding upstream 121770 709756 ~ 710941 (+)
G338479 NA non-coding upstream 167045 652521 ~ 665666 (+)
G338470 dnal4,dnal4b,dnal4a,LOC108261343 non-coding upstream 212162 610760 ~ 620549 (+)
G338588 NA non-coding downstream 1860 860142 ~ 860681 (+)
G338592 NA non-coding downstream 6130 864412 ~ 869828 (+)
G338599 NA non-coding downstream 51476 909758 ~ 911098 (+)
G338603 NA non-coding downstream 57021 915303 ~ 987522 (+)
G338605 NA non-coding downstream 100606 958888 ~ 960192 (+)
LOC107197228 NA other upstream 65105 682779 ~ 767606 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 448457 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 513014 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 789195 36033 ~ 43516 (+)
LOC111192066 NA other downstream 153874 1012156 ~ 1017351 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 1020167 1878449 ~ 1955333 (+)

Expression


Co-expression Network