G338592


Basic Information

Item Value
gene id G338592
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 864412 ~ 869828 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU465933
ttttttgtgagcctttgtttctttttggatctcttcttttctttgtggcttcttttaagagttcttttctttctaatcTCTTTTCTTCAATACCCActgttaccggtcacccctctacaaaggtgtgacGGTGAACTGAGGTTTGGCTGGGGTTTTTAAGCTGTGTTCACAGCTGAGCCTGATCTGAACTAATTaccgctggggattctgggacttggagtttTTTGCCCCAGATCCACCAGCTCTTCCACCGCAgtgtccaggccctctgctggtGGTTGGCGGCACATGCCGCTTTCTTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU465933 True 305 lncRNA 0.47 2 864412 869828

Neighbor

gene id symbol gene type direction distance location
LOC103028631 NA coding upstream 6130 832711 ~ 858282 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 381286 413883 ~ 483126 (+)
LOC103034296 nupr1,LOC103367043,LOC108413333 coding upstream 480473 379870 ~ 383939 (+)
LOC111192054 NA coding upstream 480473 382233 ~ 383939 (+)
sh2b1 sh2b1,LOC108410604,LOC107754626,LOC107660817,LOC107567095 coding upstream 564377 286970 ~ 300035 (+)
LOC103028207 NA coding downstream 120610 990438 ~ 999281 (+)
LOC103038537 LOC108413147 coding downstream 295965 1165793 ~ 1182981 (+)
LOC103043644 LOC108412315 coding downstream 710285 1580113 ~ 1589996 (+)
LOC103043029 atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653 coding downstream 754933 1624761 ~ 1628818 (+)
ube2z ube2z,LOC107740626 coding downstream 765059 1634887 ~ 1646466 (+)
G338588 NA non-coding upstream 3731 860142 ~ 860681 (+)
G338463 NA non-coding upstream 86231 665990 ~ 778181 (+)
G338489 NA non-coding upstream 151872 709574 ~ 712540 (+)
G338490 NA non-coding upstream 153471 709756 ~ 710941 (+)
G338479 NA non-coding upstream 198746 652521 ~ 665666 (+)
G338599 NA non-coding downstream 39930 909758 ~ 911098 (+)
G338603 NA non-coding downstream 45475 915303 ~ 987522 (+)
G338605 NA non-coding downstream 89060 958888 ~ 960192 (+)
G338615 NA non-coding downstream 110638 980466 ~ 981121 (+)
G338641 NA non-coding downstream 136355 1006183 ~ 1006639 (+)
LOC107197228 NA other upstream 96806 682779 ~ 767606 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 480158 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 544715 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 820896 36033 ~ 43516 (+)
LOC111192066 NA other downstream 142328 1012156 ~ 1017351 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 1008621 1878449 ~ 1955333 (+)

Expression


Co-expression Network