LOC103043029 (atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653)


Basic Information

Item Value
gene id LOC103043029
gene name atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 1624761 ~ 1628818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232228.3
ACGTAGTTCATAAGCTTATAAATGACAAGGTGACAGTTTTACACGGCACTCATTGACTGTAGCGCCAAGCTTGTCCCCCAGTTCCCCGGGCCCTTCTGTACCCTATAGGCTTCAGACATGTATGCCTGCGCTAAGTTTGTCACCTCACCATctgtgCTGCGTGGGGGCTCCAGGGTCCTGGCCCGGCCTGTATCAGCGTGCATCTTCAACAGACCTGAAGCCAGAACTGAGCAGgCAGCCCTGTTGCCAGTGAGTGAAGCATCCCTCCTGAATGTGAGCCGGAGCTTCCAGACCAGTGCTGTGTCCAGAGACATCGACACGGCAGCCAAGTTCATCGGTGCTGGTGCTGCCACAGTCGGTGTGGCTGGATCAGGAGCTGGAATCGGAACGGTGTTCGGCAGTCTCATCATCGGCTATGCCAGGAATCCCTCCCTGAAGCAACAGCTTTTCTCTTATGCCATTTTGGGGTTTGCCCTGTCTGAGGCCATGGGGCTCTTCTGTTTGATGGTGGCGTTCCTTATCCTCTTTGCCATGTGAACTAGATGTCTGTCCTTTCCTGTTCCTCCTCAGTCACCTCCCTTCATCCAGGGAGCAAAATCTGACTTGCAGCTCACAAGGCCGTGGCATTGCCATTCCAACAAACTACTAGAGAATCCtacctttttatgttttgctgtAATTTTCTTCTCCCCCATTAAGTTTTATGTAAGATCTCACTACAATTTAGACAGTCTGTCTGAATAAATGGTTGGGATAACTGTC

Function

symbol description
atp5g1 Predicted to enable ligand-gated channel activity. Predicted to be involved in several processes, including ATP synthesis coupled proton transport; cellular response to L-glutamate; and negative regulation of mitochondrial membrane potential. Predicted to act upstream of or within ion transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; liver; and nervous system. Orthologous to human ATP5MC1 (ATP synthase membrane subunit c locus 1).

NR:

description
ATP synthase F(0) complex subunit C2, mitochondrial

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02128 ATPeF0C, ATP5G, ATP9; F-type H+-transporting ATPase subunit c

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232228.3 True 762 mRNA 0.51 5 1624761 1628818

Neighbor

gene id symbol gene type direction distance location
LOC103043644 LOC108412315 coding upstream 34765 1580113 ~ 1589996 (+)
LOC103038537 LOC108413147 coding upstream 441780 1165793 ~ 1182981 (+)
LOC103028207 NA coding upstream 625480 990438 ~ 999281 (+)
LOC103028631 NA coding upstream 766479 832711 ~ 858282 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 1141635 413883 ~ 483126 (+)
ube2z ube2z,LOC107740626 coding downstream 6069 1634887 ~ 1646466 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107582884,LOC107667758,LOC106607494 coding downstream 33962 1662780 ~ 1724118 (+)
LOC103042716 LOC108412287 coding downstream 98633 1727451 ~ 1734615 (+)
LOC111192052 msl1 coding downstream 134471 1763289 ~ 1767948 (+)
casc3 casc3 coding downstream 141472 1770290 ~ 1781998 (+)
G338762 NA non-coding upstream 17742 1606626 ~ 1607019 (+)
G338754 hoxb9,hoxb9a,LOC107585091,LOC107662432 non-coding upstream 68130 1554515 ~ 1556631 (+)
G338748 hoxb7,hxb7a,hoxb7a,LOC107687793,LOC107582958,LOC107717221 non-coding upstream 81747 1542137 ~ 1543014 (+)
LOC111192050 NA non-coding upstream 88427 1527674 ~ 1536334 (+)
G338752 hoxb4,LOC107740620,LOC107585041,LOC107687779,LOC107582891 non-coding upstream 107793 1514660 ~ 1516968 (+)
G338817 NA non-coding downstream 71966 1700784 ~ 1701076 (+)
G338826 NA non-coding downstream 225779 1854597 ~ 1860367 (+)
LOC111192066 NA other upstream 607410 1012156 ~ 1017351 (+)
LOC107197228 NA other upstream 857155 682779 ~ 767606 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 1240507 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 1305064 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 1581245 36033 ~ 43516 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 249631 1878449 ~ 1955333 (+)

Expression


Co-expression Network