G338762


Basic Information

Item Value
gene id G338762
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 1606626 ~ 1607019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU466195
GATTttgacatgttggatcattgatGTCGGTCAATATTAGGATTTTCTAACATGgcagtatttttgttttgtgataTATACTGCAATGTAACTTTTTTCTAATAGCATGCAGCCCTAGTCTAATGTATGATGGTCAGAAGCAAATTCACAATTATTTGTGCTCTCTGGATCACAGCAAAAACACTTAAGTGTTCGAagtaatgcaacaaaaaattCCAAGTAGACATAAGACAGACTCTTTTTGTACCtatttctgcttcttcttcttcaagcttcctgttttttgtttggACAAACACCATCCTGCCCATTATCCACCTTCATCACTCCACCAAAGGCCCAGGATCAGAGACTTTCTCTGAGAGCAACCACTCACCTAAGAATTCCTTACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466195 True 394 lncRNA 0.38 1 1606626 1607019

Neighbor

gene id symbol gene type direction distance location
LOC103043644 LOC108412315 coding upstream 16630 1580113 ~ 1589996 (+)
LOC103038537 LOC108413147 coding upstream 423645 1165793 ~ 1182981 (+)
LOC103028207 NA coding upstream 607345 990438 ~ 999281 (+)
LOC103028631 NA coding upstream 748344 832711 ~ 858282 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 1123500 413883 ~ 483126 (+)
LOC103043029 atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653 coding downstream 17742 1624761 ~ 1628818 (+)
ube2z ube2z,LOC107740626 coding downstream 27868 1634887 ~ 1646466 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107582884,LOC107667758,LOC106607494 coding downstream 55761 1662780 ~ 1724118 (+)
LOC103042716 LOC108412287 coding downstream 120432 1727451 ~ 1734615 (+)
LOC111192052 msl1 coding downstream 156270 1763289 ~ 1767948 (+)
G338754 hoxb9,hoxb9a,LOC107585091,LOC107662432 non-coding upstream 49995 1554515 ~ 1556631 (+)
G338748 hoxb7,hxb7a,hoxb7a,LOC107687793,LOC107582958,LOC107717221 non-coding upstream 63612 1542137 ~ 1543014 (+)
LOC111192050 NA non-coding upstream 70292 1527674 ~ 1536334 (+)
G338752 hoxb4,LOC107740620,LOC107585041,LOC107687779,LOC107582891 non-coding upstream 89658 1514660 ~ 1516968 (+)
LOC111192064 NA non-coding upstream 314918 1263505 ~ 1291708 (+)
G338817 NA non-coding downstream 93765 1700784 ~ 1701076 (+)
G338826 NA non-coding downstream 247578 1854597 ~ 1860367 (+)
LOC111192066 NA other upstream 589275 1012156 ~ 1017351 (+)
LOC107197228 NA other upstream 839020 682779 ~ 767606 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 1222372 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 1286929 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 1563110 36033 ~ 43516 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 271430 1878449 ~ 1955333 (+)

Expression


Co-expression Network