G338754 (hoxb9,hoxb9a,LOC107585091,LOC107662432)


Basic Information

Item Value
gene id G338754
gene name hoxb9,hoxb9a,LOC107585091,LOC107662432
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 1554515 ~ 1556631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU466183
TCctgtcttgaaaaaaaaaaatgtaatgcacAAGTAGTAAAAGTGCCATGCAATAGGCTGTTATGTTGGTGTTTATTCAGTACAGTGTTATGAACAGGGGAGAGTTGCAGCATTTTTAGAAATACCGGAAGCAAAAACAATTAGTTATTGATACCTAAATGACAAGAACAGACCGTTTTCTGTGTAAACTTTTAATATGTGTCCAGCATTCGTTGTTCCATTGCACACAAGAAAAAGGGAGCGATTGTGTACAAAAAGAACTTTTGGTTTTGTGACTGAAATAACTTTTGGCTGAGATTGAcaaaatccagatttttttttttacagaaacgctgtaacaaataaaggaagagaaaaggaaaaaggagTCAATGCAGCATGCcaaatgaaaatgtgtgtgtgagtgttctgcgtgtgtgtgtgtgtgtgtgtgtgttctgcatcTGTCTGTGATTTTGACACCGTTAGAGAGAGATGGGTCAATAGTGTCACATTCTCCAAGGATGCTTTGGAAATTTGCAGACAGACGTGCACGCGACTGCAGAAAAGTCCAGGCAATTAGAAACATAGACAAATGCAAACATGTTGAGATACCAATCAGGACCTCCGCACAAGCAAAGCAATACAACATCGAGCGACCAATACTTGAATAATAGTTATCTCTGACAACACAAATAGACATCAACatgtaaacaatatttaaaaagaataaagaatatgtATAATACCTGCTAAATCAAGTATGAGATCTCGTTAAACGCTCCACCTTTTTAACACATTGTAAAACGCATTCCACCAAAAGAAATCGTATTTACAATAAATTAGAATTGCCCTACTAAGACTACACATAAATGAACGCCCACTTTTACAAACTAACTTTAAAATCACACAAGAGAGAAGGTAAACATATCAACGATACATGCGCTAATGTAGGTaaacatttatacacatatatatataacttaaagTGTATTTAGCTGAGTTTGTTTTACTTATCTACGGCCGAATTATTTAGTTACTGACAAGCTATACGCACATAAACACATCTAGCAGATCTTTACCTTAAATCCGTTCGTTCTTCGACTTCATATCatatttcaatttaaaacagaaatgcaTAAGGGCCTGTACAGTTAAACGTTGATATcactatataatttataatataagtGTTAAGATGTAGTCAAATAAGCAATGATATATGTACCATTAAAATGTACAACGCAAAGCAACTATGGATGAAGTACATCATACCTAAAATCAAAAAGACTTGCATAAATAATGAACTATTAGAGAATTTCAGTTGGTATGCTGTAACAGATTTAAAAAGGTACCCACTGTTTTTGTTCCAGTATTCAGATTATCAAAGAcattatgataaaataaaaagcgtAAAATAGTGAATACCTGAATGCCTGCCCATAAATGGCTCTCCTAaagatataatgataataataatgacaataataataataataataataataatgccGATTTGTTGATAAAGGCGCAACCTGCAACCCtgctgctgcaaaaaaaaatacgttAGAAAAAACTTTCTTATAGTAAAAATATACGTAGCTGTATTTATATTTCCGTAAAGAAGGAATGGTggaaacacaaagtaaaaaaacacgCATTACATAGTTTCATTTTGCTATAGGCAACCTActcatataaaaaagaaaacctatTCTTAAATATTCCCTCAGTTGGTCTGCATCCCAAAAAATTTATATTCTTTTTGTGGGCTGGGGTGATGTAGGGAATAAACAAAGGCTACAAACACTCCTTGTTTCACTGTCCAGAGGTAAGCACATTTTGATAAAAGAGACGGAGGAGGAGGCTGAGTGTACACACTTTTGCCCTCATTCCTTGGACTGATCCTTgttcattttcttcattttcatcCGTCGGTTTTGGAACCAAATTTTAACTTGACGTTCCGTCAAGTTCAGCAAACGCGCTACCTCATGTCGCCGATCTCGGGTAAGGTACATGTTAAAGAGAAATTCCTTCTCGAGCTCCAGGGTTTGATATTTCGTGTAAGGACATCGCTTCTTCCTGGACGAACGGGCGTGCAACCAGTTGGCCGA

Function

symbol description
hoxb9a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in CNS interneuron; paraxial mesoderm; and spinal cord neural tube. Orthologous to human HOXB9 (homeobox B9).
hoxb9 Enables sequence-specific double-stranded DNA binding activity. Involved in cell chemotaxis. Located in nucleoplasm.

NR:

description
homeobox protein Hox-B9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU466183 True 2096 lncRNA 0.35 2 1554515 1556631

Neighbor

gene id symbol gene type direction distance location
LOC103038537 LOC108413147 coding upstream 371534 1165793 ~ 1182981 (+)
LOC103028207 NA coding upstream 555234 990438 ~ 999281 (+)
LOC103028631 NA coding upstream 696233 832711 ~ 858282 (+)
LOC103036801 doc2a,si:dkey-93n13.3,LOC107689068,LOC107739394,LOC107552479,LOC107754561 coding upstream 1071389 413883 ~ 483126 (+)
LOC111192054 NA coding upstream 1170576 382233 ~ 383939 (+)
LOC103043644 LOC108412315 coding downstream 23482 1580113 ~ 1589996 (+)
LOC103043029 atp5g1,LOC108413019,LOC107740625,LOC107662391,LOC107585044,LOC107582887,LOC108256653 coding downstream 68130 1624761 ~ 1628818 (+)
ube2z ube2z,LOC107740626 coding downstream 78256 1634887 ~ 1646466 (+)
igf2bp1 igf2bp1,LOC108412303,LOC107717213,LOC107582884,LOC107667758,LOC106607494 coding downstream 106149 1662780 ~ 1724118 (+)
LOC103042716 LOC108412287 coding downstream 170820 1727451 ~ 1734615 (+)
G338748 hoxb7,hxb7a,hoxb7a,LOC107687793,LOC107582958,LOC107717221 non-coding upstream 11501 1542137 ~ 1543014 (+)
LOC111192050 NA non-coding upstream 18181 1527674 ~ 1536334 (+)
G338752 hoxb4,LOC107740620,LOC107585041,LOC107687779,LOC107582891 non-coding upstream 37547 1514660 ~ 1516968 (+)
LOC111192064 NA non-coding upstream 262807 1263505 ~ 1291708 (+)
G338685 LOC103037352,LOC108413138,LOC108279860 non-coding upstream 347067 1186513 ~ 1207448 (+)
G338762 NA non-coding downstream 49995 1606626 ~ 1607019 (+)
G338817 NA non-coding downstream 144153 1700784 ~ 1701076 (+)
G338826 NA non-coding downstream 297966 1854597 ~ 1860367 (+)
LOC111192066 NA other upstream 537164 1012156 ~ 1017351 (+)
LOC107197228 NA other upstream 786909 682779 ~ 767606 (+)
G338430 nupr1,LOC103367043,LOC108413333 other upstream 1170261 379811 ~ 384254 (+)
atxn2l atxn2l other upstream 1234818 303017 ~ 319697 (+)
LOC111192057 zwi other upstream 1510999 36033 ~ 43516 (+)
G338841 col1a1,col1a1a,LOC107585052,LOC107740634,LOC108279263 other downstream 321818 1878449 ~ 1955333 (+)

Expression


Co-expression Network