RNA id: TU466195


Basic Information

Item Value
RNA id TU466195
length 394
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G338762
representative True

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 1606626 ~ 1607019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTttgacatgttggatcattgatGTCGGTCAATATTAGGATTTTCTAACATGgcagtatttttgttttgtgataTATACTGCAATGTAACTTTTTTCTAATAGCATGCAGCCCTAGTCTAATGTATGATGGTCAGAAGCAAATTCACAATTATTTGTGCTCTCTGGATCACAGCAAAAACACTTAAGTGTTCGAagtaatgcaacaaaaaattCCAAGTAGACATAAGACAGACTCTTTTTGTACCtatttctgcttcttcttcttcaagcttcctgttttttgtttggACAAACACCATCCTGCCCATTATCCACCTTCATCACTCCACCAAAGGCCCAGGATCAGAGACTTTCTCTGAGAGCAACCACTCACCTAAGAATTCCTTACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466183 lncRNA upstream 49995 1554515 ~ 1556631 (+) True G338754
TU466175 lncRNA upstream 63612 1542137 ~ 1543014 (+) True G338748
XR_002649791.1 lncRNA upstream 70292 1527674 ~ 1536334 (+) True LOC111192050
TU466180 lncRNA upstream 89658 1514660 ~ 1516968 (+) True G338752
TU466181 lncRNA upstream 89658 1514660 ~ 1516968 (+) False G338752
TU466268 lncRNA downstream 93765 1700784 ~ 1701076 (+) True G338817
TU466281 lncRNA downstream 247578 1854597 ~ 1860367 (+) True G338826
TU466298 lncRNA downstream 271430 1878449 ~ 1952537 (+) False G338841
TU466303 lncRNA downstream 345595 1952614 ~ 1955333 (+) False G338841
XM_022668515.1 mRNA upstream 16630 1580113 ~ 1589996 (+) True LOC103043644
XM_007232230.2 mRNA upstream 16630 1587819 ~ 1589996 (+) False LOC103043644
XM_022668474.1 mRNA upstream 423645 1165793 ~ 1182981 (+) True LOC103038537
XM_022668521.1 mRNA upstream 607345 990438 ~ 999281 (+) True LOC103028207
XM_022668492.1 mRNA upstream 748344 832711 ~ 858282 (+) False LOC103028631
XM_007232228.3 mRNA downstream 17742 1624761 ~ 1628818 (+) True LOC103043029
XM_007232229.2 mRNA downstream 27868 1634887 ~ 1646466 (+) True ube2z
XM_022668503.1 mRNA downstream 55761 1662780 ~ 1724118 (+) True igf2bp1
XM_022668504.1 mRNA downstream 55761 1662780 ~ 1724118 (+) False igf2bp1
XM_007232227.3 mRNA downstream 120432 1727451 ~ 1734615 (+) True LOC103042716
TU466019 other upstream 590688 1012171 ~ 1015938 (+) False LOC111192066
TU466020 other upstream 590688 1012171 ~ 1015938 (+) False LOC111192066
TU465696 other upstream 1222372 379881 ~ 384254 (+) True G338430
TU465693 other upstream 1222641 379881 ~ 383985 (+) False G338430
TU466304 other downstream 343957 1950976 ~ 1954313 (+) True G338841

Expression Profile