RNA id: XM_007232230.2


Basic Information

Item Value
RNA id XM_007232230.2
length 1451
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC103043644
representative False

Chromosome Information

Item Value
chromosome id NW_019172936.1
NCBI id APWO02000145.1
chromosome length 1987809
location 1580113 ~ 1589996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCGCGCGCCCAGGCGGCGCCGCGGCGGATAGCGCGCGCCTCTTATTAGTGGAAGACGGGACGAGTGGAGAGAGCACGTAAGGGGGGTGGTGCGGGGGTGGGCAGAGGCTACAAAAACAACTCATCGTTTCCCCTATAAACGAACTTGGCTCGGATCTACAAAGGTCCTTTCAGCGGCGGAGAGAGCAACAGGGACATTTATATACAAGCTTCCGTTTTGGACATATTTGAACTGATATCATCTCTTGTTCTGTCCGGAGGTCAAAGTTCAGTTGGGAAATTAGTGGAGAAAGATGCTAGCGGAGGGCAGGGAGTCTCCAGTCACCTCCTTGTCGCATGCTTACAGTGATAATGGGGAAGAAGACGCGTGCCCGCGCATGGCCTTGCTAGCCGGAGTGGAACACAGCCGGCGGCACAGGACCGCGTTTACGCGCGAGCAGCTGTCCCGTTTGGAGCAGGAGTACGGAAAAGAGAGCTACGTGTCCCGAGCTAGACGGTGTGAACTGGCAGCTGCGCTCAACCTCCCCGAGACCACCATTAAGGTGTGGTTCCAGAACAGAAGGATGAAGGATAAGCGACAGCGCCACAGCCTGAGCTGGCCACACCCACTGGACCCGAATCTGTGTGCCTTTATGGTGAGTCAGGCAGCCGCAGGGCTCCCATACCACCTGCTGCCTCATATCCCTCTACAGCTGTACTCTCACCTGGGTATGGGAGGCATGCCCCCCCTCTCCAGTCTGTCCAGTCCCTACAGTGCTGCCTCCGTAAGACCACCGGACACTTTACGCCTTCCACACTCTCCTTACCCTAGGTTTGGTGGGGCTCCATCTCCTGTACTTTATCCCTCAATACACACAATGCAACACCCTCCAGCCTGTCCCTGCCCCTACTGCCTGCACTGGGGACCAGACCAAATACTTAAGGCCAGAGGTGGAACCAGTCTTGGACTGAGTCTGGCTAGCAGCCCAAAACCTACAGCTGCACTATTAGAATGCAGAGAAGAAGTAACTTTGCCTCAGTGAAGGAAGTgacttatttaatattatttaactttaacttaGACATCTTTGTACAACATTCTCTGTCCTAGTACAGAGTTCAGTGGAAACCAAACTGATACTGGAACAGAGCTAATCAAAGGCATCTAATGCACAAGATGTGTAGCAGTGGAGCAAAACCTCTTCAGAAGGACAGGAGGTGACTTGATCTCATCCTACACAGAATCATATTGCAAAGCAACAATCAAAGCTAGATTAAGGATAATGTCATGTTAGTTTAATGTTTGCTGAACTGTTTTAAGGTTACATTTTTATGacattttgaaaatatattttgtaatatccttgtcattaaaaaaaggtgGCATATGAACACTGTAAAGGTAACTTGTGTATATATTGGCTTCAAAGAAAGCTCTATGACAAACgtctattaaaatatttatgaaaACA

Function

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466183 lncRNA upstream 31188 1554515 ~ 1556631 (+) True G338754
TU466175 lncRNA upstream 44805 1542137 ~ 1543014 (+) True G338748
XR_002649791.1 lncRNA upstream 51485 1527674 ~ 1536334 (+) True LOC111192050
TU466180 lncRNA upstream 70851 1514660 ~ 1516968 (+) True G338752
TU466195 lncRNA downstream 16630 1606626 ~ 1607019 (+) True G338762
TU466268 lncRNA downstream 110788 1700784 ~ 1701076 (+) True G338817
TU466281 lncRNA downstream 264601 1854597 ~ 1860367 (+) True G338826
TU466298 lncRNA downstream 288453 1878449 ~ 1952537 (+) False G338841
TU466303 lncRNA downstream 362618 1952614 ~ 1955333 (+) False G338841
XM_022668474.1 mRNA upstream 404838 1165793 ~ 1182981 (+) True LOC103038537
XM_022668521.1 mRNA upstream 588538 990438 ~ 999281 (+) True LOC103028207
XM_022668492.1 mRNA upstream 729537 832711 ~ 858282 (+) False LOC103028631
XM_022668493.1 mRNA upstream 729537 836109 ~ 858282 (+) True LOC103028631
XM_022668467.1 mRNA upstream 888118 682779 ~ 699701 (+) False LOC107197228
XM_007232228.3 mRNA downstream 34765 1624761 ~ 1628818 (+) True LOC103043029
XM_007232229.2 mRNA downstream 44891 1634887 ~ 1646466 (+) True ube2z
XM_022668503.1 mRNA downstream 72784 1662780 ~ 1724118 (+) True igf2bp1
XM_022668504.1 mRNA downstream 72784 1662780 ~ 1724118 (+) False igf2bp1
XM_007232227.3 mRNA downstream 137455 1727451 ~ 1734615 (+) True LOC103042716
TU466019 other upstream 571881 1012171 ~ 1015938 (+) False LOC111192066
TU466020 other upstream 571881 1012171 ~ 1015938 (+) False LOC111192066
TU465696 other upstream 1203565 379881 ~ 384254 (+) True G338430
TU465693 other upstream 1203834 379881 ~ 383985 (+) False G338430
TU466304 other downstream 360980 1950976 ~ 1954313 (+) True G338841

Expression Profile