XLOC_025165 (asphd1)


Basic Information

Item Value
gene id XLOC_025165
gene name asphd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15271943 ~ 15284693 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049708
GATCTACGGTAACGCAAGACGCAGACGGCGCTCTGCATAGGAGCTGTCCAGCGTCTCGGTGCTGAAACTTGCCCTGGCGGCTCTCAGcgaacagcaagaaggtttggtATCAGTTCAAAATAAGGCTTAAACCCCCAGCAGCGAAGACGTTGCTGATTCCGATGCGTCAGTACATGGACAAAGGTCTGCAGATAAACAGAGGAAGAAGGGACGTGGCGAGAACGAAAGGGGGACAGAGAGACTGAGTAAGACTGTGGAGAAGTGCTCACTCTCTCAGCATTATGTCCTGGTCTCTGGACTTGGTGCCACTTCCCCCGTGTTCAGTGTTGGGTGGTCCTCCTTTCAGCGGGCTCCTCTGGACTGTCCTGCTCCTCTTCCTCTGGTACTGCTACCGAGTCGGATCTGATCCTCCATCCCACTCTGGAATGCTGAAAAGCAGCTCAGGCCGTTCCTCATTTTCCCGATCATCCAGCCGTTCTCCGGTCGACCCAGGACTCTCTTCTCCTAAATCATCGGCGGCTATTAGTCTGGAGGCGGTGGAGGAAGAGGAGGGAACAGAGAGCTACCTGACGCCGGTTTTGAGCCACTCTCCATTTCCTACGGATGCTGCAGCAGGCAGCAGGAAACTCTATCGGGCACTACAAGAGTATGCCAAGCGCTACAGTTGGGCTGGCATGGGCAGAATTCACAAGGGCCTGCGCAATCAGGCCAGGATCAATGATCGGCTGTCCATTCAGAAGCCTCACCTCTTCTACCTCCCGGATGTTCCTAGCATTCCCTTCTTCCCCAGGGATGCCCATCGTCATGACATTGAGGTTCTGGAGGCCAGCTATCCCATAATCCTTGCAGAGTTTCAGGCAGTCTACCAGAAGGGCATCGACACAAAGCTAGGATGGAGCTATCAAGGACCAAAGGGCCAGACTGTGTTCCCACTCTACAATGCCGGTGTGTGTGTGGCAAGTAACTGCAGAGCGTGTCCATGTTCATACCGAACCCTCCTCTCTCTCAGAACCTTCATCAGCAGCAACTCTCTGGGCTCCGCCGGCTTCTGGCTCCTGGGGCCCGGGGCCACACTGGCAGGCACTTACGGCCCCACAAACACACGCCTGCGCTGCCATCTGGgtcttCAGACTCCTGCTCAGTGTGAATTGGTGGTTGGTGGAGAGCCTCAGTGTTGGTCAGAGGGACACTGCCTCCTTGTGGACGACTCTTTCCTGCACACCATCTCACACAACGGGGCAGCAGAGGACGGTCCTAGAGTCATCTTCAGCGTGGACCTCTGGCATCCCAACGTAGCCGCAGCCGAGAGACAAGCTCTAGACTACATCTTTGCCCCCGAGCAGTAATTCCAGCTGCATTTCCCAGGATGCACTGCTCAATCCCTCTTCATGTCATATTTAAATGTAgaaaagttttttgttgttgttaaaacttCAAACTGAGAATATTGATCATTTAACAACCACATCTTTTTATGTGCGCCTCTGTTTGAGTTTTAGACAAAGTAGACAGACAAATCAGACGACATATGGATCATATGTTGAGCCCTGAGCACACAGATACTGTGACGACACGTGATGAACAATTTCATATCTATATTTGACTTGTGCCTGTCTTGATAATCCCGCGCTCCTGTTCTCTCATTTTTGTGCCTGATTTCTCCTCCTGACCTCTCTGATGTTATACTGTGATTCATGGTTCTCCGTAAATACTGTACGCGTGTCTCATGGCTAtgctatttagttttttttttttttttaaatctcatcaATTATTTTTTCAGACCTGTGAAGCACACCGAACACAACATACTGTGTATGACCGGACTACTTGCATGCGTTGTGAATTTTGATCGTGTTGCCAACAATGCGCTTGATGACTGTCCTGCAAATCAAGTATGTATTCAGCCGGGTTAACATCCAAAtaaaaaattttgttaaattt
>TCONS_00052624
CTACGGTAACGCAAGACGCAGACGGCGCTCTGCATAGGAGCTGTCCAGCGTCTCGGTGCTGAAACTTGCCCTGGCGGCTCTCAGcgaacagcaagaaggtttggtATCAGTTCAAAATAAGGCTTAAACCCCCAGCAGCGAAGACGTTGCTGATTCCGATGCGTCAGTACATGGACAAAGGTCTGCAGATAAACAGAGGAAGAAGGGACGTGGCGAGAACGAAAGGGGGACAGAGAGACTGAGTAAGACTGTGGAGAAGT
>TCONS_00049709
ATCAGCAGCAACTCTCTGGGCTCCGCCGGCTTCTGGCTCCTGGGGCCCGGGGCCACACTGGCAGGCACTTACGGCCCCACAAACACACGCCTGCGCTGCCATCTGGgtcttCAGACTCCTGCTCAGTGTGAATTGGTGGTTGGTGGAGAGCCTCAGTGTTGGTCAGAGGGACACTGCCTCCTTGTGGACGACTCTTTCCTGCACACCATCTCACACAACGGGGCAGCAGAGGACGGTCCTAGAGTCATCTTCAGCGTGGACCTCTGGCATCCCAACGTAGCCGCAGCCGAGAGACAAGCTCTAGACTACATCTTTGCCCCCGAGCAGTAA

Function

symbol description
asphd1 Predicted to enable dioxygenase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human ASPHD1 (aspartate beta-hydroxylase domain containing 1).

GO:

id name namespace
GO:0018193 peptidyl-amino acid modification biological_process
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-62 Predicted to enable dioxygenase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human ASPHD1 (aspartate beta-hydroxylase domain containing 1).

Ensembl:

ensembl_id ENSDARG00000075813

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049708 False 1944 mRNA 0.50 7 15271943 15284693
TCONS_00052624 False 260 lncRNA 0.53 2 15271946 15272293
TCONS_00049709 True 330 mRNA 0.60 3 15279016 15284095

Neighbor

gene id symbol gene type direction distance location
XLOC_025164 NA coding upstream 40105 15229952 ~ 15231838 (+)
XLOC_025163 tspan10 coding upstream 85651 15176737 ~ 15186292 (+)
XLOC_025162 nfixb coding upstream 213479 14768364 ~ 15058464 (+)
XLOC_025161 zgc:158403 coding upstream 583833 14641962 ~ 14688110 (+)
XLOC_025160 tspan35 coding upstream 633544 14611299 ~ 14638399 (+)
XLOC_025166 cabp5b coding downstream 12131 15296824 ~ 15317392 (+)
XLOC_025167 sh2b1 coding downstream 73766 15358459 ~ 15392466 (+)
XLOC_025168 atxn2l coding downstream 109735 15394428 ~ 15425689 (+)
XLOC_025169 NA coding downstream 220491 15505184 ~ 15506157 (+)
XLOC_025170 NA coding downstream 232859 15517552 ~ 15517899 (+)
XLOC_025429 BX649540.1 misc downstream 14964046 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 872291 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 984102 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 1017178 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 1023405 14242119 ~ 14248538 (+)
XLOC_025172 NA non-coding downstream 333585 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 354759 15639452 ~ 15646667 (+)
XLOC_025174 NA non-coding downstream 400669 15685362 ~ 15719823 (+)

Expression


Co-expression Network