XLOC_025166 (cabp5b)


Basic Information

Item Value
gene id XLOC_025166
gene name cabp5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 15296824 ~ 15317392 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049710
ATGATACAGCTGAAGTAAAAGCAAGACACTGCTGCGTTGAGGATCATTAGAGCGTTTAATCATTCAGTATCTGCTGACTGACAGAAAGAAACGTTTCTTCTTGCTCCAAATTCAAGAATAGCTGGAAAGGAGAGAAGCTGACAGAAGCAAGTGGAGAACTCAGAGAAACTGCACTTCCTTTACTGCTTCCTGCcgacaaacagagagagagagagagcagCATTGAAAAATCATTTTTGAAGAGGCTCAGAAGAAACTCAAAAGAAGCTGTCATGAGTCTAGGGCCGGCTTGCATTTTCCTAAGAGGATCTAAAAATGCACACCGTCCTCTTGCTGACGAGGAGATAGATGagctgCGCGAGGCGTTCACTGAGTTTGATAAGGATAAGGATGGTCTGATCAGTTGTAAGGATCTGGGAAACCTGATGAGGACGATGGGCTACATGCCCACTGAGATGGAACTGATTGAACTGAGCCAGAACATCAACATGAACCTCGGAGGAAGTGTCGATTTTCAGGATTTTGTGGATCTCATGGCTCCAAAGCTGCTGGCAGAAACAGCTGGAATGATTGGAATAAAAGAGTTAAAAGATGCATTTAAAGAgTTTGATATGGACGGTGACGGATCGATCACCACTGAAGAACTGAGGCTTGCAATGCTGAAACTGTTAGGTGAAAACACGAACAGGAGGGAAGTAGAAGCCGTGGTCCGAGAAGTAGACAACAATGGTGATGGGACTGTCGATTTTGAGGAATTTGTCAAAATGATGTCTAAAAATTGAGAAGACACCTGGgatcctgagaaaaaaaaataacaaaacactcaAGGGATGGAAACAACTGCATCAGAGACTCATTCAAACCGTCACTAAAGTCACTGGATATTACGCTATGCATATGGAAACTGTATTTTATACTACATTTTGTTTGTACGTTTATATCTTATGCTCTGTTTCGCTTTGTTCGATGACCTAAAACGAATAAACGATGCACTCTTAAGAACTCTGTAAAATGATGATGTCATATATCATTATTATGTAACAATATTTAAGagatatgtatgtatttatttataacatatcTGACATACATGTACTGAATTGGATTGCATCTTTCACTGGGCACGCATTCTTGAACTTTTGGCATTAAACCAAGTAAAAATC

Function

symbol description
cabp5b Predicted to enable calcium ion binding activity. Is expressed in notochord; otic vesicle; and retinal inner nuclear layer. Orthologous to human CABP5 (calcium binding protein 5).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-146 Predicted to enable calcium ion binding activity. Is expressed in notochord; otic vesicle; and retinal inner nuclear layer. Orthologous to human CABP5 (calcium binding protein 5).

Ensembl:

ensembl_id ENSDARG00000028485

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049710 True 1163 mRNA 0.40 8 15296824 15317392

Neighbor

gene id symbol gene type direction distance location
XLOC_025165 asphd1 coding upstream 12131 15271943 ~ 15284693 (+)
XLOC_025164 NA coding upstream 64986 15229952 ~ 15231838 (+)
XLOC_025163 tspan10 coding upstream 110532 15176737 ~ 15186292 (+)
XLOC_025162 nfixb coding upstream 238360 14768364 ~ 15058464 (+)
XLOC_025161 zgc:158403 coding upstream 608714 14641962 ~ 14688110 (+)
XLOC_025167 sh2b1 coding downstream 41067 15358459 ~ 15392466 (+)
XLOC_025168 atxn2l coding downstream 77036 15394428 ~ 15425689 (+)
XLOC_025169 NA coding downstream 187792 15505184 ~ 15506157 (+)
XLOC_025170 NA coding downstream 200160 15517552 ~ 15517899 (+)
XLOC_025171 doc2a coding downstream 233130 15550522 ~ 15608166 (+)
XLOC_025429 BX649540.1 misc downstream 14931347 30248739 ~ 30249036 (+)
XLOC_025154 CU639471.1 non-coding upstream 897172 14399225 ~ 14399652 (+)
XLOC_025151 NA non-coding upstream 1008983 14277650 ~ 14287841 (+)
XLOC_025149 NA non-coding upstream 1042059 14251244 ~ 14254765 (+)
XLOC_025148 AL954138.2 non-coding upstream 1048286 14242119 ~ 14248538 (+)
XLOC_025172 NA non-coding downstream 300886 15618278 ~ 15621754 (+)
XLOC_025173 NA non-coding downstream 322060 15639452 ~ 15646667 (+)
XLOC_025174 NA non-coding downstream 367970 15685362 ~ 15719823 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04204946_04208081 CABP5B, CABP5, CABP5A coding CI01000034 null 4204946 ~ 4208307 (+)