XLOC_025146 (si:ch211-108d22.2)


Basic Information

Item Value
gene id XLOC_025146
gene name si:ch211-108d22.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14157090 ~ 14189022 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049682
GAAAAAAAGAATcgggagagagagggaaaaaagtcACACGCAGTGCGTGAGAGATCGGGAAGTTTGTAGATTTTAGACCATAAAGTCTGTTATATTCCCTTTAAGTTTATATTTAGTGTGTTTAGCTGTGCACACACGTTGCTAAAAAGAAACGGAAAGAAGATCTGATTTGTGCAGTAACGTTAAGTGAGAAACAGTTTAAGTTGTCCTTTGCATATGGAAAGTTCTTCACAGGACTTTAATCACTAAAATTAGTTCGAAACCCTTACGAACTGAAAACTGACGTGAAGAACGAACTTGCTGGAAGCATCACGGTGAAAGGAAGCACACCTTTTGTCATCTGATAAGACTGAAATGCCGTCAGCATGGCCTGTGCAAACCAGTCTGCAATTCAATACATCAAAATTTACAGAGTAAAGCTGGTGACGAAAATGAGAAACCTTCCTCTGATCGTTGAGAATCTTTATCAGcaaaatgttttcagtgaacatgAAGTTGATGCTCTTAAAGCAGAGAGGACAGAGTTTGATAAAGCAAGAAGTATATTGGACTGGGTTGTTAACAAAGGGGAAGAAGCAAGTTATCAATTACTCAGCATTCTGGATGTCACTCAGAAGAGGACTTTATCTTCTGATTTACACCACTGGATCAGCTGTTTTCCCTTTAGAGTGGAAGATGGAGAGACCAGCTATACATTTGGTACAAAGCCCTGTCAGAACTACCAAACACGGCTCAGAGAGAAAGCAAAAAATATCCTGAAAGACCAAAGAAAAGGTTGCCGCAAATATCTGGAAAAAGAACAAGTGAACTTCCAGTTTATACCTCTTGTTCTAGAAACGGACTGTGTGGCACAAActccacaaaacaaaataaaatgtaaaaacaagaaAGGCAAAAAACTGCGAAACAAAAAGCTGAGAGCTTACATTCCTAAAGAGAAGCATTCACCATCACCTCTGGATCTTCTGAAAGGTCAAGAAAAGAAAATCCTCCTTGTAGGCAAACCAGGGATAGGAAAGACCACAGTTGTCCAGGAAATGTTGCGTCTGTGGGCAGAGAAGAGTGACAAAGGTCTGGACTACATGTTTTACTTTGGTGAAAATTCTTTGGCCCACAGTTCTAACATTGGCAGTTTGGAATCAGTTTTATTTGATGTGTATTTGAAGCCCATAGAAAAAGATAGAAAGGAAGTGTTTGAAGATATCGAGGAAAACTCTGAGAATGTTGTCATTGTATTCGATGGTGTGACAGAATTGAATGAAAATTCCATCTTATGGAAGATCATGCAGCAAGAGCTCCTGCCCGATGCTAAGATTGTGATCACTTGCAGATCAGAGGTGGAAGATGATCCCCTTTTCTCAAATTGGCCAACTCAGAAAGTGTATGTCCAAGGATTCAGTAAAGAATCAATCAGAATTTACTACAAGAATAGGTTGGGTCATGATCCAGTTCTTCTAGATCTAGTTTTAAAGAATCAAGAGCTCTTCAGTCTTAGCCACGTTCCAGTATACGCATTTATGATTGTCGACTTGATTCAGTTTAAAACTGACCGAGTTTTTCACCATTCACACACAGTCACAGAGATGTACATTCACATTTTACGTGTTGCTGTGAAGAAACATGGAAAGAAAAATATTCAGCAAATTGATGGCTACCTGAAAGagattaaagatcagatttgtcTCTTGATGAAAAATGCATTCAGTGCTACTATGCAGAGGAGCCTAAACCTTCAAGATATTTCCAGTGATGAGACGGACATTTGTCATGCTTTTCTGAAAATGATCACAGTAAAAGATTCACCAACATCTGCAGTGACATACTGTGCATTTCTCCACAACACAATGCAGGAGTTCTTCTCAGCTTTGTGTCTTCTTGGAAATCCAGAAAAGATTGAGGATGTCCTACAGCACAGTCAGACAAAGGAGTACAAACACATGAGACACGTGCTCCCTTTCTTATGTGGACTTCTGAGCGAACACAACACCAGACTACTCAAGAGTCTCTTCCCAGAGGATCAGATGAAGGAAACGCGAGACTGGTTCATTGAGAAGTTTCTGAACAGTTTCCTCCAGCCTCAGAGTGACAGTGAACAGTTTGATCTTCTCTATGTGTGTCAGTGCTTGTATGAGCTCCAGTCTCCTGAAGCTTGTTTAATGTTCCTGGAGAAGATGAACCATCAGATTGAACTTGAGGTGGATCTTGATCCTCATCAGCGTTGTGCTTTGGCTTATGTGATTAATCAATCAGGAGAAAAGGTTTATCTGAATCTGGGGGACTGTGACATGATGGACACGGGAATGGACATGATGCTCAGCTGCTCACCAAACGTCAGGTTAAAGCTTCATAAAGAACCCCTGAAGCAAATCGCAAGCCTTCTAGAATTCTTCCATAAAGCATCTCAATGCCATTGCAACTTTGCTGATGTGGGAAACAAAAACAACCAAGACACATGCAAGGCACTGCTGGATCTTTACTCACATGTGAAGAACTATGAGACTCAAACAGGCAGGAGTTTCATTCCAGCATTACAGTCAGTTTTCCAGATTCCTGATGTCTGGATCATAGATCTCTCACAGAGAAAGACCTCTGTCCTCCTGGAAGTGCTAAAACTGCAAGCAGAGAAGAAACCAGTAGAGCTGAGAGGATGTTCAAAGGAAGAGAGTGAAGTGAAGAGTTTCCTCCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTTTCTACGAGGGTGATGAAGAAAAATTGTTCCTGATAAATCTCATAGATGCTGCAGTAAAAAATGACACAGATACAGAACCAAGTTTGTTAAATCCACTGTTATCTGTGTGCAGTTATAAAACTTTCCACTTTAAAGATAAGTGGAATGATTATAGTTTGAAACTTGATCAGTGTAATTACCTGCTGGATCTTTACTCACATGTGATGAACTATGAGACTCAAACAGGCAGGAGTTTCCCTCCAGCATTACAGTCAGTTTTCCAGACTCCTGATGTGTGGATCATAGATCTCTCAAAGAGAAAGACCTCTGTCCTCCTGGAAGTGCTAAAACTCCAAACAGAGAAGAAACCAGTAGAGCTGAGAGGATGTTCAAAGGAAGAGAGTGAAGTGAAGAGTTTCTTCCAGTGTCTGCCCTTCATCTCACAGCTCAGGTTTTTCTACGAGGGTGATGAAGAAAAATTGTTCCTGATAAATCTCATAGATGCTGCAGTAAAAAATTACACAGATACAGAACCAAGTTTCTTAAATCCACTGTTATCTGTGTGCAGTTATAAAACTTCAGAATTTAATAAAGAGTTGGGTGATTattttttgaaacaaaaacagGCCCATATCCTGCTTGATCTTTATCCACATGTGATGAACTATGAGACTCAAACAGGCAGGAATTTCCCTCCAGCATTACAATCAGTTTTCCAGATTCCTGATGTCTGGTATATAGATCTCTCAAAGAGAAAAAGCTCTGTCCTCCTGGAAGTGCTAAAACTCCAAACAGAGAAGAAACCAGTAGAACTGCTAGAATGTTCAGAGGAAGAGAGTGAAGTGAAGAGTTTCCTCCAGTGTCTGCCCTTCATCTCACAGCTCAGGTTTTACGATCGGACTAGGAGTGCAGTGCAGATTGTTTTAAAACTCATCATTGAAGCTGCAGAAATTGAGACACAGACAGGAGATAAGATGCTGAAACAGTTATCATCAGTCTGCACACACAGCTTCTTTCCTCTTAGTTGGACTGCAACATTTTTTCAGAGTGATTTCCTGCTGGATCTTTACTCACATGTGAAGAATTATGAGACTCAATCAGGCAGGAGTTTCATTCCAGCATTACAGTCAGTTTTCCAGATTCCTGATGTCTGGGTCATAGATCTCTCACAGAGAAAGACCTCTGACCTCCTGGAAGTGCTGAAACTCCAAGCAGAGAAGAAACCAGTAGAGCTGAGAGGATGTTCAAAGGAAGAGAGTGAAATGAGGGATTTTCTTCAGTGTCTGCCCTTCATCTCACAGCTCGGGTTTGACTATTGGACTAGGAGTGCAGTGCAGACTGTTTTAAAACTCTTCATTGAAGCTGCAGAGATTGAGACACAGACAGGAGAGAAGATGCTGAAACTGTTATCATCAGTCTGCACATACAACTATTTTCCTTATAGATGGACTGACAGAATTAAACAGAGTGATTTCCTGCTGGATCTTTACTCACATGTGAAGAATTATGAGACTCAAACAGGCAGGAGTTTCATTCCAGCATTACAGTCAGTTTTCCAGATTCCTGATGTCTGGATCATAGATCTCTCACAGAGAAAGACCTCTGACCTCCTGGAAGTGCTGAAACTCCAAGCAGAGAAGAAACCAGTAGAGCTGGGAGGATGTTCAGAGGAAGAGAGTGAAATGAGGGATTTTCTTCAGTGTCTGCCCTACATCTCACAGCTCGGGTTTCAATTTTGGAGTAGTAAAGTGCAGACTGTTTTAAAACTCTTCATTGAAGCTGCAGAGATTGAGACACAGACAGGAGAGAAGATGCTGAAACATTTATCATCAGTCTGCACATACAACTTTTTTCCTGATACATGGACTGAAGAAATTAAACAGAGTGATTTCCTGCTGGATCTTTACTCACATGTGAAGAATTATGAGACTCAAACAGGCAGGAGTTTCATTCCAGCATTACAGTCAGTTTTCCAGACTCCTGATGTGTGGACCATAGATCTCTCACAGAGAAAGACCTCTGTCCTCCTGGAAGTGCTGAAACTCCAAGCAGAGAAGAAACCAGTAAAGCTGAGAAGATGTTCAGAAGAAGAGAGTGAAATGAGGGGTTTTCTTCAGTGTCTGCCCTACATCTCACAGCTCAGGTTTGACTATTGGACTAGGAGTGCAGTGCAGACTGTTTTAAAACTCTTCATTGAAGCTGCAGAGATTGAGACACAGACAGGAGAGAAGATGCTGAAACTGTTATCATCAGTCTGCACATACAGCTTCTTTCCTTATGGATGGACTGAAAAAAATTTTCAGAGTAATTTCCTGCTGGATCTTTACTCACATGTGAAGAATTATGAGACTCAAACAGGCAGGAGTTTCATTCCAGCATTACAGTCAGTTTTCCAGATTCCTGATGTCTGGATCATAGATCTCTCACAGAGAAAGACCTCTGTCCTCCTGGAAGTGCTGAAACTCCAAGCAGAGAAGAAACCAGTAGAGCTGAGAGGATGTTCAGAGGAAGAGAGTGAAGTGAAGAGTTTTCTTCAGTGTCTGCCCTACATCTCACAGCTCAGCTGTGCTAAACCTCTGCTGCTTCAGTTTCTGACTCATGTGAGGCGCGAGCAGGCAGAGTCTCTTTCTGCAGCTCTGGGTGAAGAGCTGGACCTCAGTCAGACTCCACTGGACCTGCAGGCCTGTAGAGGTTTGGCGCTGATTCTGGAATATTCTGAAGGACTGACTGAACTGGATCTGAATCAGTGTCATCTCACCGATTACAGCCTGGATCTGCTGCTCCCAAACCTCCACAAAGCACAAAACATCAACTTCCGTTGGAATTACATCACTGATGTTGGGGCTCAGAAAATCTACAGTGTCTTCTCTCACAACAGTAACATATAGACAATGAGGCTGTAGGTTTGTCACCAAGGTAAATAACAATATGGAAAAATCACTCCTTGAAGAACCACTCGTCAGAGTCCCAAAGATGAATCTAGTCATCAGACCATAAACCACATTCATCTTTTATCATCACCTTAAGAAATGATCAACAATGGGTTCAAATAATACAGCGTTATATTATTTGACAAATAGGGTAATTATAGTttgattttagtttagtttaatttattttagttttatttatttagttttaattttaatcttATATAAACTTATATTCTGTTAggtttacaattattattattagtgtagtTCATTCTGTGTGCTGTCTGCTCTGACTGGTATGTTTAGATTTAGACAGTTTTCAGACAATAAGCGTAAATATTTAACAGGTTGAAGATTTCAGCTCAGACAGCTAAAGTAAACAGCTTTAAGCCTTTAAAAGAGCTGATTTAAGTACTTTATTTCAAGTTAAAATGCCGTTACACTTCACTAGATGTGGATCCTGACTGAACTACATTCATGTGATGCTTACAAATGCCAACAGTATTAGATGTAATCCGTTTTGAGGTGATGTGAACCCGACACATCAACAATGACCTCATTTACATGCACATTCATTTCTGATTAAGATTcataatttctttattttgatcAAACTGATGTGATAATGGATGTTTCTCAAAAACTATTGAAATATTCACATTTTACTGCCTGAGCTCTAGAATGCTGACAGAATACAAGAGACGGAATAATACTCAGAAAATCACTTTTATCTCATTAATGTGACTGAAATGTCAGTTACTGTAGGAAAAACTTCTGTTTTTATCACCTCATGATATTTTCCTTATATTGTTGCTTGGTTCTGTCTTTTGGAACTTTTTACTTAAcagtgtttttgatttttttttttaagatacacATTATAAGGAAGAAAAGGATACTAGCAATGTGTCGCCAGAGAGTTTTAAACAAAGGTACTGAGGGGAtgcaatatattgcaatatattactGAGATTGACGGTACTAATAAACATTAGCAAACGAGAATAGAACAACTGCATAAAtagtaaattacattaaaaattaacccccccaaaaaaagaaagacactTAGCAAATTACAATTTTGAGACCAGGCATGATCAAACTGTCTATATTTGATATCGAATTGGACATTTTGATTGACTCATTTTTATTCACTGATTAACGAAGCATCTCCTAGATGTAATTACTGCCAGGCTGCTCTCACCATTAGACAACATTTTTTATAAGGAGAGTACTTtgaaggacatttttaaaaaggaaccACCAGCaaaaattgtaaattatttatcacaaatttaatttcattaaatttcATTTATGTAATCAACAGCAAGCAAGTTGCTGTTCTTATGTTGTGTTGTTTATTGTTACACTTGCATTGTGTGCTTCGCTtgatgtttaattaaaataaaaagggaaACTTG

Function

symbol description
si:ch211-108d22.2 Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm.

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-97 Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000097615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049682 True 7057 mRNA 0.39 13 14157090 14189022

Neighbor

gene id symbol gene type direction distance location
XLOC_025145 NA coding upstream 83320 14028243 ~ 14073770 (+)
XLOC_025144 syce2 coding upstream 221253 13929860 ~ 13935837 (+)
XLOC_025143 ilf3b coding upstream 256016 13842554 ~ 13901074 (+)
XLOC_025142 ptger1b coding upstream 320027 13830599 ~ 13837063 (+)
XLOC_025141 si:ch211-194b1.1 coding upstream 472693 13637383 ~ 13684397 (+)
XLOC_025147 NA coding downstream 12021 14201043 ~ 14202519 (+)
XLOC_025148 AL954138.2 coding downstream 53097 14242119 ~ 14248538 (+)
XLOC_025149 NA coding downstream 62222 14251244 ~ 14254765 (+)
XLOC_025150 si:ch211-108d22.1 coding downstream 70093 14259115 ~ 14260797 (+)
XLOC_025151 NA coding downstream 88628 14277650 ~ 14287841 (+)
XLOC_025429 BX649540.1 misc downstream 16059717 30248739 ~ 30249036 (+)
XLOC_025134 NA non-coding upstream 679217 13476872 ~ 13477873 (+)
XLOC_025131 dre-mir-27c non-coding upstream 743877 13406451 ~ 13413213 (+)
XLOC_025130 dre-mir-23a-2 non-coding upstream 750767 13406226 ~ 13406323 (+)
XLOC_025129 NA non-coding upstream 751008 13389862 ~ 13406082 (+)
XLOC_025154 CU639471.1 non-coding downstream 210203 14399225 ~ 14399652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01104312_00001194_00003177 NA coding CI01104312 null 1194 ~ 3177 (-)
mexican tetra (Astyanax mexicanus) G284265 LOC107576697,LOC107564376,LOC107559181,LOC108415460,LOC108414272,LOC108272973,LOC106610364,LOC108415153,LOC108414004 misc NW_019172578.1 APWO02002176.1 30886 ~ 58984 (-)