G284265 (LOC107576697,LOC107564376,LOC107559181,LOC108415460,LOC108414272,LOC108272973,LOC106610364,LOC108415153,LOC108414004)


Basic Information

Item Value
gene id G284265
gene name LOC107576697,LOC107564376,LOC107559181,LOC108415460,LOC108414272,LOC108272973,LOC106610364,LOC108415153,LOC108414004
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172578.1
NCBI id APWO02002176.1
chromosome length 80539
location 30886 ~ 58984 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU390506
TTTCAGATCTGCTGATGGTGAGGTAGTgatgatggagaaagagagtgaactCATTCCTGCTGGATCTGTGTCTGCAAGCAGCTCTTCACCAGAAAGAGGATCTTCACTCAACTGTAGAGAGACTGATCTCATGTTCATATGgtgaaaaatcagattttctgcTGGATCTGTTCTCACATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGATTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccCTCTTCCTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAACTGATAGGCTGCTCAAATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGAATTGGTTTTGGGTCTGACATCAGAATATTTCTGGATCTGTTGATTAAAGCAGcagagtgtgagagacagacaggagagaaAACACTGGAGCTGTTAACATCAGcgtgctcttacagctcttttCCTTATGAATACACTCGCTACTCTGATCAGAGTGAATACCTGCTGGATCTGTTCTCTCATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGATTCTTCCAGCATTACAGCCAGTTTACCAGTCAGTTCCTGCAGTCTGGAGTATAAACCtctcagagagaaagagctccCTCTTACTAGAAAAGTGGGGCTGGGGAAACTCCAAACAGTGAAGAAACCAGTAGAACTGAGAGGATGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGGTTCAGATCTGCTGATGGTGAGAGTGATGagtggagaaagagagtgaactCATTCCTGCTGGATCTGTGTCTGCAAGCAGCTCTTCACCAGAAAGAGGATCTTCGCTCAACTGTAGAGAGACTGATCTTATGTTCATATggtaaaaaatcagatttcctGCTGGATCTGTTCTCACATGTGAAGAAGTATGAGACTGAAACAGGCAGGAGTGTTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccCTCTTCCTAGAAGTGCTGAAACTCCAAACAGTGAAGAAACCAGTAGAACTGATAGGCTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGAATTGGTTTTGGGTCTGACATCAGAATATTTCTGGATCTGTTGATTAAAGCAGcagagtgtgagagacagacaggagagaaAACACTGGAGCTGTTAATATCagtgtgctcttacagctcttt
>TU390507
TTTCAGATCTGCTGATGGTGAGGTAGTgatgatggagaaagagagtgaactCATTCCTGCTGGATCTGTGTCTGCAAGCAGCTCTTCACCAGAAAGAGGATCTTCACTCAACTGTAGAGAGACTGATCTCATGTTCATATGgtgaaaaatcagattttctgcTGGATCTGTTCTCACATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGATTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccCTCTTCCTAGAAGTGCTGAAACTCCAAACAGTGAAGAAACCAGTAGAACTGATAGGCTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGAATTGGTTTTGGGTCTGACATCAGAATATTTCTGGATCTGTTGATTAAAGCAGcagagtgtgagagacagacaggagagaaAACACTGGAGCTGTTAATATCagtgtgctcttacagctcttt
>TU390511
CTGGATCTGTTCTCTCATATGAAGAAGTATGAGACTGAAACAGGCAGGACGATTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccCTCTTACTAGAAGTGCTGAAACTCCAAACAGAGAAGAAACCAGTAGAACTGATAGACTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGAGGAGCTGAGAAGTTTGTCCCTGTACTGTGTAAACATGTTCAGTCAGTAGAGGAGGCGACTCTCCTGCTTCAGGCTCTGgacttttctctcactctggAAGGAAAGTTACCCACTTCCAGCTGCAGAGCTGTGGGGAGAGTGCTCCGTCTCTCAGACTCCAAACTTAACCTCACTCTGAACCCACAATCCATCTCTCTCAGAGGAACCAGACTTCTCTTCAGACACGTCACACACCTGCGTACTCTCAGG
>TU390519
TTTCAGATCTGCTGATGGTGAGGTAGTgatgatggagaaagagagtgaactCATTCCTGCTGGATCTGTGTCTGCAAGCAGCTCTTCACCAGAAAGAGGATCTTCACTCAACTGTAGAGAGACTGATCTCATGTTCATATGgtgaaaaatcagattttctgcTGGATCTGTTCTCACATGTGAAGAAGTATGAGACTGAAACAGGCAGGACGATTCTTCCAGCATTACAACCAGTTTACCAGTCAGCTCCTGCAGTCTGGAGAATAAACCtctcagagagaaagagctccCTCTTACTAGAAAAGTGGGGCTGGGGAAACTCCAAACAGTGAAGAAACCAGTAGAACTGAGAGGCTGCTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTTCATCTCCCAGCTGAGAATTGGTTTTGGGTCTGACATCAGAATATTTCTGGATCTGTTGATTAAAGCAGcagagtgtgagagacagacaggagagaaAACACTGGAGCTGTTAATATCagtgtgctcttacagctcttt

Function

NR:

description
PREDICTED: uncharacterized protein LOC108415460

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU390506 True 1371 lncRNA 0.45 4 44493 58984
TU390507 False 535 lncRNA 0.44 3 44493 58984
TU390511 False 501 TUCP 0.49 2 30886 37656
TU390519 False 543 lncRNA 0.45 4 44493 58984

Neighbor

gene id symbol gene type direction distance location
LOC111190427 LOC108414272 non-coding downstream 2929 27417 ~ 27957 (-)
G284270 NA non-coding downstream 3898 26468 ~ 26988 (-)
G284269 NA non-coding downstream 4899 25657 ~ 25987 (-)
G284268 NA non-coding downstream 8124 22307 ~ 22762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025146 si:ch211-108d22.2 coding NC_007114.7 CM002887.2 14157090 ~ 14189022 (+)