XLOC_025280 (zgc:103564)


Basic Information

Item Value
gene id XLOC_025280
gene name zgc:103564
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22335030 ~ 22341106 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049901
CTGTTTACGGAAGTCGTAGAGGGGAGCCGTGAAGAAGTGTGGACTGGTGGTTCTCATACGTTAAACAGCTTTTAAAATCCAACCAAACGCTTAATTAGTTAACCACACAGTGGTCAAGTGGTAGCTTCATTTAAAAAGCCATATCTCGATGGATATTGAAGTCGATATAATTGAGTTCAAAGTCCCACTCGAAAAcaacaaaactatttttatttgggATATTCAGCCTACATTTACAGAGGCCTATATTTATGAGTCCCTGTGGAGCGTGTATTCGGCATTTGGAGATCTTTACCTGCTGAAAGTGTGTCCCAATGCCACGGTGGCTGAACCTGGGTTTTACGCCTTGGTGAAGTTTTACTCATCAGCACAGGCATCTAAAGCACAGCGGGCCACTGATAAACAGTGTCTTTTTCAGAGCTCTCCTTTAAAGGTCCGACTGAGCACAAAACAGAATCTGTCCTTCTATAGCAGTAAACCTCTCTGCCTATCCAAATGTCACAACCTTGCCAATCACTATCTGGGCTTTGGTGGCTGGACTACTCGCATTGTCACTTTGAAGGATCTCTCTAACTGTGTAGATGCTGGATGCCAAGAAGAAACAGGCGACCAGGGTGTGCTTTTGAAATATGGCTGCATAATGGAGTTAAGCTTCCCACATCATGGTATGAGTTGTCAGGGGGTCGGTGTGGCAGAGGAGGTACTTGACAGTGATCAGGATCCAGAGGAAAAGCTGAGAAAAAGGGGGGCATTAATGAAACGAGCCAAAGACAAAGCCATGGAGGTTGCGTTTGAAAAAGTGCTGCTCCTAATCCTGGGGAACGGGAAAGTAGCAATTGAAATCAAGATTGATCCAGATGAGATTGTCCCTGAAGAAAACTCGGAAGGAGTCATAAAAGTAAATGATATCTCCTGGACTCATATTGAAAGTGCTGACAGTAATGCAGAGGAGGATTTCCTATGGGACCTCACAGAGGACCTTCCTTATTGACACCCACTCAACACCAATGTTTTCCAGATAAGTGACCACTGAAAAGGGGACATGGATTCTATTTAATGCTTAGTATTGACCACAATGCCATAGGTTTGCAGGATTATGGTTATATTTTATGATAATCCTCTCAATTTCAGTTCATCTGACCTCAGGTTCCTCTTCTCTGTTTCTAAAGTGATTCTCTGTTTTTTTATGTGGCTGACACACCAAGGCCACAGGTTGGGGTTTTAAAGGTTAGCTCATATTTCAAGCCAACAATGTCATTTCAGAAAGACTTTAGGGAAGTTCAAACTTAATTATTATGGTCCGTTTTTTGTGTTTGGTGCACTTTGGAAATGGGCACTATATTAGAATACTTAAAgacttttttcttattaaaataaaatacattttgtgtgTTGTGATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000038186

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049901 True 1400 mRNA 0.42 7 22335030 22341106

Neighbor

gene id symbol gene type direction distance location
XLOC_025278 gh1 coding upstream 2117 22327738 ~ 22332913 (+)
XLOC_025277 scn4ab coding upstream 18186 22242269 ~ 22316844 (+)
XLOC_025276 NA coding upstream 172548 22157933 ~ 22162482 (+)
XLOC_025275 cdc27 coding upstream 179498 22035863 ~ 22155532 (+)
XLOC_025274 NA coding upstream 337472 21929928 ~ 21997558 (+)
XLOC_025281 arhgap27l coding downstream 34490 22375596 ~ 22422169 (+)
XLOC_025282 coa3b coding downstream 85608 22426714 ~ 22551356 (+)
XLOC_025283 BX649557.1 coding downstream 227881 22568987 ~ 22569106 (+)
XLOC_025284 tanc2a coding downstream 237263 22578369 ~ 22817455 (+)
XLOC_025285 NA coding downstream 505230 22846336 ~ 22848196 (+)
XLOC_025429 BX649540.1 misc downstream 7907633 30248739 ~ 30249036 (+)
XLOC_025272 NA non-coding upstream 737122 21378996 ~ 21597908 (+)
XLOC_025271 NA non-coding upstream 1014545 21312584 ~ 21320485 (+)
XLOC_025270 NA non-coding upstream 1083223 21245897 ~ 21251807 (+)
XLOC_025286 BX322574.1 non-coding downstream 513567 22854673 ~ 22880447 (+)
XLOC_025293 NA non-coding downstream 755336 23096442 ~ 23213329 (+)
XLOC_025296 NA non-coding downstream 1065365 23406471 ~ 23411521 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_02581924_02584745 NA coding CI01000034 null 2581579 ~ 2584745 (-)