XLOC_025270


Basic Information

Item Value
gene id XLOC_025270
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21245897 ~ 21251807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052642
CATCCACTGATACAGATACAATACTCAGGCTGGTTAAACTGCATTTTTAGATTTGTAATATGTTTCAATAAAATATTGCTATTGAATTTTGCTGTCTTATTCAGATttgcattacagtttttcttgtttgctttgacctggttaaagaaactataGGTTCCACTTTATTCTCctcatcactatcccagcagagcagaagacaggtcttgcaaatatgtaaaccctttctcattgggttgacacattttccccaccgtttttcaaaacagttaacactgATGTCATTCAAttagtccaaactccattgttttagctatggtaaccaaacagaaaccatttaTTCCTAACaattagaaactaccaagatcagtatgaattcactgaagcaccggtttgacactccatCACACAAATCTttaattagcaatcagtctgcaaacatcgaaaacggtggaaggtctgtgttctTCAGTGCTAGCATAGATGGAGGAGGTCAAAAGTGGCTAATAGATTTGACTGTTTATTGGTTTACAcatgttttctctaatatttacagtaatcaAAGCATgtcttattctggatccaattctttgcaaaaaggcaaatttgacagcccaaatagaaagacaataaACGGCATTGGCAATAgtctacaatggcaagcaatgatgcacactgagttctgtattttgtattccATTGTGGTATGGTtgattgaaagagctcatatacttgtttgaaagttgtgttgtttgaaggtaaaactagcttttgttgcatattttaaatgttttgacacggtatgtgcGTTTTGCAagcaaatgtgtcattttgaccatgagtgccgctgtttaggcttGTGTGTTTACTGTTTTGAAAACGTGGAGATTCAGTTGACGACTGCATCAAAGCAATGAAGAAAAACTGCAAGTTACTGTTTTGAACATAAGTTTAACAATTTGGAAAACAGTATGTAAGCACGGACAAAACGTCCTGTATGTACAAAGATTTTTGGCAGTTGTCGTGTCTGAGTGAGAAAAAAAGAGTTTGAGAGATGTAGTCATTGAATGCATTTTGTGCCAAAACAATGATAATTGATCCTTAGTTTAGCTCACAAAGACTTCTGTTGTGCTCACTGTGTGAAGAGTTTTGCAAAAgcgtttataaaaaaataaataaaccgttgcatttatttatttacacttttttagttacaccttactagtaccaagttGGACCCTATTTTGCATttagatctgccttaatcctttgtggcatagattcaacaaagtggTCATTCAAATATTCCTAAGAGATTCCTTAGAGACATGtctaccttataaagtggccattgagtgtagTTAGATCTATATGTCTATAATGTGTAAGTAATTTTAGGTACATTGCATTTCAATTTCCTCAAGGACAAAATCATAACTcatacattataaatatttaaaccgTATATTTGATTACTTTAGGcccatttaattttaaaacatacgtgagtgtttaattattttacttgcattttcaatttgtttttcaaatgatcCAAGTGACATTTTTTACCACAttcaattaataatattattgttttgcaTATATAAGAGTAATTACTTTTATTAGAGAATGTTTTTCCTAACgtttttcacaaatgcaaaattaaaacataaattcttaatatttacatgtatatttGATTACTTTAGTTCTATTTGATTTCCCCTTTCATCTAGTTAGCATATTcataaaattacaacaaaacattaacaaattcAGCTATGTACAACAATTTGTCAACTACAGTATGTCCATCAGTCAATGTCTTTTATTGTCATCTATATCAGACAAGCAACATACAAGACAGGACAAAATACACAGCCATATTAACCTAGTGATTCAGTTAATGGACACTCACCACATCAAGAGAATTTACACTATTTTGAATCCCAGTATCTCCATAACTGcacatatacattatataataacACATCTGATACATCACCTACATAATATGCTGATTGTATTGTAGCTTTCCTTTTTAGAAGTTTcaacaagaaataaataaataaaaaaatgtttcctgATTCAGAAAACAATGTCACTTCCTAAACAGAGAAAGGATAAACATTATTCTATGACACCGTCAAATGCAAAGTACACAATTAATATGATTATTTCCGACAGTTGTTTAGGTAATAAATTTATAaagatatttatgtattatattacatCTTTgtcgttaaataaaaatatgctggtttcatatatatatatatatatatattcaggtacataattatgcacatttttctgttttccaaaacttaattgaaaataaaacattatttatctgTAACATAGAACCCTGCTGTTCCAGTGCAAGGATTATTAACTatgatcaaaaaataaaatagcaaaagatGGCCAGATAAATCTATATTAAGGGTGCTACAAAGACTCGTTACATACATAATGAAAGTTTTTTTCACAAGTTAAACACCATTGTAATGATTAATCATGATCATTTCCCTAAAGATTTCACATGATCCCATTTAAATGAAGTAAATTTATAGTGACTTTTTGATAACATCCCAGCAGACACGTCATAAGAcattattattaggttagatttaagttgccagcatctaaggacaatgttattttgatgtccaataacaacgatatgtggatgattttaggttgtgttggaaagtgacaaaaACCCAgtattgagccaacatcttaatacaacgtcaaattgacatcaaatacttaCATTTAATTGTCaggtacaacaaaacaaaaacccaaGGAGTGGTAACATCGACACAACGTCAagatgtaacatcattagatgttgatatttggttgattttaggttgcgttggaggGTAACCGAAATGCAACGTCTGACAATGGCGCCCACGACATTGAGgtacgtcaatctgacgtcatgttgatgttctgtgcctgctgggatttgCGTTAGTTTGTTTTTCTGATAAATTTAATTGCTTTAACTTAGCAATGGTCTGGCCAtacttcaaaaacatttttcaaagtcaGGAATCGAGTGTTGCACCACATATGTTTACATTCGCGATTAAATGACATACCATCATTAAAGGTTATGTCTAAATCACTGGTATAAAAATGTAAACGTCTACCATGCTGAAAATAACATGCACAGTGGCCccaaacatttgtcaaaataaaCGTTTCCATAGCTGTGATCTTGCCCACAGAAGTGTATTATATTCGATGACGTAAgagtgcccaggcccgattgtagtgtgagtgcggggggacaagtgtgctttggcccggttcgaggcaactgtacatagtgtgagtacggcctaagacaactcaaactgtttgaggaaatcgattgcaacaaaccatttgagttaaaaaaaatcgacagtatatgagtactgtgaactttctccatttaagttgaagtaattagGTATTTacttaactcattacctttaacactgagttcaaaactcttttcaaatgagtagatttACTTTCAGGAAGTTTTGAgttaagttgactgttgggttttacagtgtactaatattttaaatgtttaatgataGGAACACATATGTGTTTATGACTCAATATAAATAAGTTAACATTACTCAAACCATTTTGTTTCAAAGCGTAAGTGTATAGTGAATGGAAAAACACTGCTCTGCtttgaataatattaaaatggtttaagcttaaatataaatgtttatgatTTTAATAGCCATTAAGAGAGCAACAATTGATAATTTACCTCCTAATTTCGTGACAGGTCTTGAAATGCATACCTTACAATACATGCATACACATTAGCGTAAGTTGACAGTTATAGCTTGCTGACTGCTATTTGATGAACAGAAAAGGAATAAAATGTCGCTGAAAAACATTGTAACCAAAACAATAgacaaaatgtgtgtaaaaacacaataaaaaacatGATATGATACAGatactaaatacattttgataaatggCAGCTAAAGTGACTTAACAAAAGTCCCTGATATTGCATGAAAAAAAGATCTGAAAATCCTCGACTTACCCTGCTATACATTTTTCACTATTACAAGTGCACACATACAATAAGTGCATTCAACTGAgcattgtttgtgtgtttagtaAATTCTGTCACAAAACATAAGGTATAAAAGCCAGTTTCTTTTGCTTCATCTCCTTTGATTTGCTCTTAAAAATGGCAGGAATGCTAACTGACCcaaatgtgatttttaatgaaattatttaGCTAATTTTCAGGTCAATCACAGAGGTTTTCCCCTTAATCACAATAAAAGTGTTGTCTATCTATAGTAACTGTATGTGAAGCAATACAGTCTAGTATAATCGATGCAGATCAGAATGTTGTGCGAGGGTACAAGTTTTCTCTTTGCCAGTGTTTAGCTTTCAATTCAAGTTAAGTTTTATATTTTGAGTAGTATTTGAGGCCACTGTACATATGAAATGTTGCCTTTCTGTAAAGAAACCTTAAAATAATGCAATCGCTGgcatgctacaaaaaaaaaacaaacaaacaaaaaacggcTTCCATTTCAGCAACCTACAAATTCCCTTCCagtatttttttactttcattatcTGTAAGATCTTACATAGGTTCTTTTGCTACGCTCTGTGCCAACAATGCAGATATTTATTTTATCCTACATAGTTTTGTTTAGCCTTGGTAAAATGGCAGCACAAAACTACTTATGGATTATCTTGTGGCAGGTTAAGAGTTCATGTAACAATCTACTTAATCACCTACATGTTTTAACATTAAAAGACACTGTGGTCTCTGAAAATATTAAGTTTGGTCACTAGTTAGTGCCTTTACCTATTGTAGAAATAAACATACAGCTTTCTTTTTTCACAAGTCTAGATAATTTGTTCTAAACTAATCCTGTTTTCTCTAACAGACACTTGGAAGTGTTTACTCTGGATGGACCAATCACCTAAATCCTCCCCAAGCCCAAAATAACCCTGAAACTGAAGGCAAAAATTCCTAGTGGCACAAAATCTAGTGTACAGATCTTGTGCCACGGc

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031672 A band cellular_component
GO:0031430 M band cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052642 True 5088 lncRNA 0.33 2 21245897 21251807

Neighbor

gene id symbol gene type direction distance location
XLOC_025269 zgc:153968 coding upstream 15229 21225750 ~ 21230668 (+)
XLOC_025268 zgc:112038 coding upstream 27764 21200763 ~ 21218133 (+)
XLOC_025267 zgc:123295 coding upstream 47153 21189766 ~ 21198744 (+)
XLOC_025266 NA coding upstream 102526 21137095 ~ 21143371 (+)
XLOC_025265 NA coding upstream 179059 21057854 ~ 21066838 (+)
XLOC_025271 NA coding downstream 60777 21312584 ~ 21320485 (+)
XLOC_025272 NA coding downstream 127189 21378996 ~ 21597908 (+)
XLOC_025273 crhr1 coding downstream 417738 21669545 ~ 21889616 (+)
XLOC_025274 NA coding downstream 678121 21929928 ~ 21997558 (+)
XLOC_025275 cdc27 coding downstream 784056 22035863 ~ 22155532 (+)
XLOC_025429 BX649540.1 misc downstream 8996932 30248739 ~ 30249036 (+)
XLOC_025264 zwi non-coding upstream 215024 21025153 ~ 21030873 (+)
XLOC_025263 BX936284.1 non-coding upstream 330743 20913310 ~ 20915154 (+)
XLOC_025262 BX248239.1 non-coding upstream 565859 20679923 ~ 20680038 (+)
XLOC_025276 NA non-coding downstream 906126 22157933 ~ 22162482 (+)
XLOC_025283 BX649557.1 non-coding downstream 1317180 22568987 ~ 22569106 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G105030 k1143 non-coding NC_048566.1 CM023220.2 1702955 ~ 1704846 (+)
rainbow trout (Oncorhynchus mykiss) G2023972 NA non-coding NC_048590.1 CM023244.2 34720994 ~ 34721692 (-)
eurasian perch (Perca fluviatilis) G87790 NA non-coding NC_053119.1 CM020916.1 24905493 ~ 24905774 (-)