XLOC_025268 (zgc:112038)


Basic Information

Item Value
gene id XLOC_025268
gene name zgc:112038
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21200763 ~ 21218133 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049880
GGCACCGAAACCAATTTGCGGATGCGTCgactataaatcagccttcagagTGACACTTTCAGTAAAGTAAACAGCAAACAATACTACACAGCAGAGACAGTAAGGATGAAAGTCCGTCAATTTGTATATGTCGGAGAGTTTTTACTTCTCAATATAGCAGGAGCACTGTGTCAATTAGACGTATGTGGCCAGGCGCCTTTAAACAACAATAATGGTGGAGACGATGTCGTTGCAGGCTCTTGGCCCTGGCAGGCGAGCATTCATAGAATTTCCCCTGAAGATCACATCTGTGGCGGGAGTTTAATCAATAAGGACTGGGTTTTATCTGCAGCTCACTGCTTCATGATCACCGCTACAGCAAATATAAAAATCTATCTGGGACGTCAGTTCCAAACAGGCTCAAACCCGAATGAGATATCCAGGACATTGACTAAGATCGTCATTCATCCTGACTATAGCACAACTACTCAAAACAATGACATAGCACTGCTCAGACTGAGCTCTTCTGTCACGTTCACGGATTACATTAGGCCAGTGTGTCTGGCCAGTGCTGACAGTGTGTTTGCTGGAGGAACCAAGAGCTGGATTACTGGCTGGGACAAACACAGATCTTCAGatattCAGGTTACAAACGTGCTGCGGGAGGTGCAGTTACCGGTTGTGAGCAACACAGAATGCAATGCAGACTATAAAGGCATCATTACAGACAACATGATTTGCGCTGGAATAAATGAGGGTGGAAAAGATGCATGTCAGGGAGACTCTGGAGGACCAATGGTCAGTCAGAATGGCTCTCGATGGATTCAGTCTGGCATTGTGAGTTTCGGTCGAGAGTGTGGACTACCAAGGTACCCTGGAATTTACACCAGAGTCTCTCAATACCAATCTTGGATCACGTCTGAGTTAAGAACCAACCTGCCTGGATTTGTCTCCTTCACCTCCACTGAAACACGCTCCAGCTCACCGAGTCTGCTTTCATTTTACTTTTCTCTCACATCATCTCTCCTTCCTCTAATTTTCtccttttatctatttttttgaaaaatgtatggtttattaattaaatttttaattttttttacaaatgtaatttttatttatgctttgacGTATTGAGcactaataaaacatatttagtaCTGTATAAA

Function

symbol description
zgc:112038 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-271 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space.

Ensembl:

ensembl_id ENSDARG00000046140

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049880 True 1148 mRNA 0.43 6 21200763 21218133

Neighbor

gene id symbol gene type direction distance location
XLOC_025267 zgc:123295 coding upstream 2019 21189766 ~ 21198744 (+)
XLOC_025266 NA coding upstream 57392 21137095 ~ 21143371 (+)
XLOC_025265 NA coding upstream 133925 21057854 ~ 21066838 (+)
XLOC_025264 zwi coding upstream 169890 21025153 ~ 21030873 (+)
XLOC_025263 BX936284.1 coding upstream 285609 20913310 ~ 20915154 (+)
XLOC_025269 zgc:153968 coding downstream 7617 21225750 ~ 21230668 (+)
XLOC_025270 NA coding downstream 27764 21245897 ~ 21251807 (+)
XLOC_025271 NA coding downstream 94451 21312584 ~ 21320485 (+)
XLOC_025272 NA coding downstream 160863 21378996 ~ 21597908 (+)
XLOC_025273 crhr1 coding downstream 451412 21669545 ~ 21889616 (+)
XLOC_025429 BX649540.1 misc downstream 9030606 30248739 ~ 30249036 (+)
XLOC_025262 BX248239.1 non-coding upstream 520725 20679923 ~ 20680038 (+)
XLOC_025274 NA non-coding downstream 711795 21929928 ~ 21997558 (+)
XLOC_025276 NA non-coding downstream 939800 22157933 ~ 22162482 (+)

Expression


Co-expression Network