G2023972


Basic Information

Item Value
gene id G2023972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 34720994 ~ 34721692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2314907
TTGTATTGTTGGTCAGATCGGCATAGCAAGTCCTTGTAACTTGTGAGCATGTCATTAGCTAATTACAAGCCTCCCTGGCTGGCATGGTGGCATACCAGGCAGGGGCACAACAGGCTTCTGGTGTGACAGTCTGCAGTGTGTGACAGAGTCTCTGTGTGATACAGTCTGCAGTGTGTGACAGAGTCTCTGTGTTACACAGTCtggagattctttaaagtagccaccctttgccttgatgacagctttgcacactcttgctattctctcaaccagcctcatgaggtagtcacctggaatgtatttcaattaacaggtgtgccttgttaaaagttaatttgtggaatttcttgcctttttacagttttttttttacaattgctaggacccatttctcaatactaAATCATTTCTCATTTCTCAATTTCCCAATACTCAATACTCAATACTTAcgtcactttttcaaaactcttcacacagtaaGCACAACAGCAGTCTATGTAGGCTAAACTGTGGATAATTTTTCATTGCTTTggcacaaaatgcattcaatgactACATCTTTCAAATGTCATGAATTATTTCCTTACTCAGACACAATCACCACCAAAACTCTATGTACCTACAGGCCAATTTGCACATGTTTATAAACtattttcaaaactgttaaacttaAGTTCAAAACCTAATACAACACAATAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2314907 True 699 lncRNA 0.39 1 34720994 34721692

Neighbor

gene id symbol gene type direction distance location
LOC110506695 LOC106562360 coding downstream 120452 34585124 ~ 34600542 (-)
LOC110506693 LOC106562359 coding downstream 137900 34530588 ~ 34583094 (-)
LOC110506692 fa60a coding downstream 190766 34524997 ~ 34530228 (-)
LOC110506691 LOC106562361 coding downstream 197044 34499589 ~ 34523950 (-)
LOC110506690 tmm9b coding downstream 222082 34492474 ~ 34498912 (-)
LOC118944477 NA coding upstream 57022 34778714 ~ 34786413 (-)
LOC110506710 LOC106562348 coding upstream 145239 34866931 ~ 34879117 (-)
LOC110506712 LOC106562346 coding upstream 178093 34899785 ~ 34905525 (-)
pepd LOC106562343 coding upstream 316893 35038585 ~ 35049686 (-)
LOC110506721 LOC106562390 coding upstream 679809 35401501 ~ 35548790 (-)
G2023971 NA non-coding downstream 1980 34718782 ~ 34719014 (-)
G2023967 NA non-coding downstream 6407 34714213 ~ 34714587 (-)
G2023963 NA non-coding downstream 9344 34711418 ~ 34711650 (-)
G2023961 NA non-coding downstream 10628 34709736 ~ 34710366 (-)
G2023726 NA non-coding downstream 97154 34622387 ~ 34623840 (-)
G2023974 NA non-coding upstream 2928 34724620 ~ 34724840 (-)
G2023982 NA non-coding upstream 15907 34737599 ~ 34737834 (-)
G2023994 cyp1a3 non-coding upstream 29216 34750908 ~ 34752166 (-)
G2024052 NA non-coding upstream 111684 34833376 ~ 34833685 (-)
G2024662 NA non-coding upstream 136116 34857808 ~ 34858278 (-)
LOC100136595 calc1 other downstream 916670 33800216 ~ 33815643 (-)
G2022042 LOC106562320 other downstream 1842223 32875255 ~ 32878771 (-)
G2021975 NA other downstream 1886513 32831627 ~ 32834481 (-)
G2021979 NA other downstream 1902014 32810623 ~ 32818980 (-)
G2024673 NA other upstream 154730 34876422 ~ 34928381 (-)
G2024949 NA other upstream 674382 35396074 ~ 35399967 (-)
G2025061 NA other upstream 774095 35495787 ~ 35497803 (-)
G2025757 NA other upstream 1621464 36343156 ~ 36343434 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025270 NA non-coding NC_007114.7 CM002887.2 21245897 ~ 21251807 (+)
eurasian perch (Perca fluviatilis) G207290 NA non-coding NC_053131.1 CM020928.1 31689356 ~ 31689578 (-)
tiger barb (Puntius tetrazona) G189158 NA non-coding NW_025048382.1 JAEQBD010000727.1 483861 ~ 484876 (+)