XLOC_025329 (nptxra)


Basic Information

Item Value
gene id XLOC_025329
gene name nptxra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24482999 ~ 24501796 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049997
CTGAAGTTCATCGTTGTCATTTTGGCCGCCGGGATGGTGGCGTTCATCGGAGCAGTCATCTGCATCATCGCCGCGGTCCACAGCGGATCCCCACCGGCATCCGCCGCCGCCGCGCAGCCCCTGGCCGACAACCAGTCCCTCTCACCGGACGCAGCCGGGAAAGCGATTTCCTCCGGGTCCGTCGCCCGGGCAGGACCGCTGGATGCTCTTCACGGTACTGATGCGTCAAGCAGGGAACGAGGAGGACCGGAGGCGCCAACGTTCTACGGTCTAACGGGACTAGGGACCGGAGGCAGCGAACAGCAGGTCACCTACAGCAGACTCATCTGCACCCCTGTCCCCGCCGGTGAGTGCAACCCGAAAAACTTTCAGCAACAAGCTGACGACCAGTCGTTATATGCTGGAGAGGACTGGGGATACCTCCGCACCACTGCCGAGGAGCTCCGGCAGACCGTCCTGCAGCAGAAGGATGAGATCCTCACAGACCAGAGAACCATCCGGGAACTAACGGGAAAGCTGTCGGAATGCGAAAGTGGCATGAAGGGACGGAAGGTCCCGGAACGAAGCGCAGGGGGTGTTGGGGAAGCGCGCAAAGAGAATAAGGAGCAACTCATGATGCGGGACGATGCGGGATCCTCAATGCGGACGGCTCATGCGATGGAGGAGCTGGTGCACGCCATAACTCAGATGAAAGACCGCATTGAGAAACTAGAGTCTGAAATGGCGGCACCAGCGTTTAACCACACAGACTCAAGCTCACAGAAATCTGCAGGTGCTCCTCGTACACCAGTAGCAGCTGCACAGAGACGAGTGGAGGATCTGGAGGGAGAACTGAAGAGGAAGATTAAACTGCTGGAGGAGGAGAGGAAAGCGCTACGCAAAGAGACGCAAAAACATCAGGATCATATTGACTATGGACTGGACACTGTACACCAGCGGATCAGCAGCCTGGAGAAAGGTCTTTCTGAGAACAAGTTTCCAGAGGGTTACAGGCTCTCATTCCCCATCCGCAGCTCCTCCATGTATGCCATCATAAAGCAGGAAATCCCAATCCTCCACGCTCTGACTGTCTGCATGTGGCTCAAACCTGCAAAGAGCATCCTGGGAACTGTGGTTTCTTATGCTGTTTCTGACCAGAACCATGAGTTTGTGCTTCAGCAGCTGGTTCATGGGCCCATTGAGCTGATCATTAATAATGAGGTGGCGCTGTTGCCTCTGAACTTAACAGTGGGCAGATGGCAGCATATGTGTGTGAGCTGGAACCGAAGAGCTGGAGCATGGCACGCCTACTTAGGGGGCAAACTGAAGCTAGAAGGAAGTGACCTGGCAACCCGTCACAACATCCGACGGGGAGGAACTCTCATTCTTGGCCAAGAACAGAGCTCAATGGGTGGTCTTCGTTTTGACGCTTCGCGAGCTTTAGTGGGAGAGCTGTCACAATTCAACATGTGGGACCGGCCGATTTCCCACACAGAGCTCTCTGCTCTCGCCCTCTGCAGCACGGGCATGCTGGGTAATGTAGTCCCATGGACCAGCCGTGAGGTGGAGGTTTTCGGAGGTGTCACCAAGCAGCCGGCTGAACATTGCGAGCACAGCACCAGTGCCAGACAGTGA

Function

symbol description
nptxra Orthologous to human NPTXR (neuronal pentraxin receptor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-280 Orthologous to human NPTXR (neuronal pentraxin receptor).

Ensembl:

ensembl_id ENSDARG00000040430

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049997 True 1614 mRNA 0.56 5 24482999 24501796

Neighbor

gene id symbol gene type direction distance location
XLOC_025328 cbx6b coding upstream 18205 24458204 ~ 24464794 (+)
XLOC_025327 NA coding upstream 30986 24438597 ~ 24452013 (+)
XLOC_025326 pvalb6 coding upstream 48094 24297482 ~ 24434905 (+)
XLOC_025325 pdgfbb coding upstream 185580 24275597 ~ 24297419 (+)
XLOC_025324 zgc:123244 coding upstream 256971 24220354 ~ 24226028 (+)
XLOC_025330 dnal4a coding downstream 10163 24511959 ~ 24518496 (+)
XLOC_025331 sp100.1 coding downstream 35227 24537023 ~ 24555259 (+)
XLOC_025332 sp100.2 coding downstream 54844 24556640 ~ 24568002 (+)
XLOC_025333 sp100.3 coding downstream 69367 24571163 ~ 24591510 (+)
XLOC_025334 si:dkey-68o6.5 coding downstream 94126 24595922 ~ 24603705 (+)
XLOC_025429 BX649540.1 misc downstream 5746943 30248739 ~ 30249036 (+)
XLOC_025323 NA non-coding upstream 265488 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 298573 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 349514 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 386963 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 428784 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 554180 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 806914 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1070982 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1101872 25603668 ~ 25624618 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01109855_01118819 NA coding CI01000034 null 1109839 ~ 1121584 (-)